Huang Mohan, Chen Xinyue, Jiang Yi, Chan Lawrence Wing Chi
Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, China.
The Second Affiliated Hospital, School of Medicine, The Chinese University of Hong Kong, Shenzhen 518000, China.
Bioengineering (Basel). 2025 Mar 20;12(3):322. doi: 10.3390/bioengineering12030322.
Hepatocellular carcinoma (HCC) is a leading cause of cancer-related deaths, with immunotherapy being a first-line treatment at the advanced stage and beyond. Hypoxia plays a critical role in tumor progression and resistance to therapy. This study develops and validates an artificial intelligence (AI) model based on publicly available genomic datasets to predict hypoxia-related immunotherapy responses. Based on the HCC-Hypoxia Overlap (HHO) and immunotherapy response to hypoxia (IRH) genes selected by differential expression and enrichment analyses, a hypoxia model was built and validated on the TCGA-LIHC and GSE233802 datasets, respectively. The training and test sets were assembled from the EGAD00001008128 dataset of 290 HCC patients, and the response and non-response classes were balanced using the Synthetic Minority Over-sampling Technique. With the genes selected via the minimum Redundancy Maximum Relevance and stepwise forward methods, a Kolmogorov-Arnold Network (KAN) model was trained. Support Vector Machine (SVM) combined the Hypoxia and KAN models to predict immunotherapy response. The hypoxia model was constructed using 10 genes (IRH and HHO). The KAN model with 11 genes achieved a test accuracy of 0.7. The SVM integrating the hypoxia and KAN models achieved a test accuracy of 0.725. The established AI model can predict immunotherapy response based on hypoxia risk and genomic factors potentially intervenable in HCC patients.
肝细胞癌(HCC)是癌症相关死亡的主要原因,免疫疗法是晚期及更晚期的一线治疗方法。缺氧在肿瘤进展和治疗耐药性中起关键作用。本研究基于公开可用的基因组数据集开发并验证了一种人工智能(AI)模型,以预测与缺氧相关的免疫疗法反应。基于通过差异表达和富集分析选择的HCC-缺氧重叠(HHO)和缺氧免疫疗法反应(IRH)基因,分别在TCGA-LIHC和GSE233802数据集上构建并验证了缺氧模型。训练集和测试集由290例HCC患者的EGAD00001008128数据集组装而成,并使用合成少数过采样技术平衡反应和无反应类别。通过最小冗余最大相关性和逐步向前方法选择基因,训练了一个柯尔莫哥洛夫 - 阿诺德网络(KAN)模型。支持向量机(SVM)结合缺氧和KAN模型来预测免疫疗法反应。缺氧模型使用10个基因(IRH和HHO)构建。具有11个基因的KAN模型测试准确率达到0.7。整合缺氧和KAN模型的SVM测试准确率达到0.725。所建立的AI模型可以根据缺氧风险和可能在HCC患者中可干预的基因组因素预测免疫疗法反应。