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阐明驱动蛋白-5/双极纺锤体微管蛋白复合物(Kinesin-5/BimC)与微管之间的相互作用:来自全内反射荧光显微镜(TIRF microscopy)和分子动力学模拟的见解

Elucidating the interactions between Kinesin-5/BimC and the microtubule: insights from TIRF microscopy and molecular dynamics simulations.

作者信息

Guo Wenhan, Gao Yuan, Du Dan, Sanchez Jason E, Li Yupeng, Qiu Weihong, Li Lin

机构信息

Department of Physics, University of Texas at El Paso, 500 W University Ave, El Paso, TX 79968, United States.

Department of Physics, Oregon State University, 1500 Jefferson Way, Corvallis, OR 97330, United States.

出版信息

Brief Bioinform. 2025 Mar 4;26(2). doi: 10.1093/bib/bbaf144.

Abstract

Kinesin-5 s are bipolar motor proteins that contribute to cell division by crosslinking and sliding apart antiparallel microtubules inside the mitotic spindle. However, the mechanism underlying the interactions between kinesin-5 and the microtubule remains poorly understood. In this study, we investigated the binding of BimC, a kinesin-5 motor from Aspergillus nidulans, to the microtubule using a combination of total internal reflection fluorescence (TIRF) microscopy and molecular dynamics (MD) simulations. TIRF microscopy experiments revealed that increasing the concentration of KCl in the motility buffer from 0 mM to 150 mM completely abolishes the ability of BimC to bind to the microtubule. Consistent with this experimental finding, MD simulations demonstrated a significant reduction in the strength of electrostatic interactions between BimC and microtubules at 150 mM KCl compared to 0 mM KCl. Furthermore, we identified several salt bridges at the BimC-microtubule interface, with positively charged residues on BimC interacting with negatively charged residues on the tubulin heterodimer. These results provide mechanistic insights into the role of electrostatic interactions in kinesin-5-microtubule binding, advancing our understanding of the molecular underpinnings of kinesin-5 motility.

摘要

驱动蛋白-5是一种双极运动蛋白,通过交联和分离有丝分裂纺锤体内的反平行微管来促进细胞分裂。然而,驱动蛋白-5与微管之间相互作用的潜在机制仍知之甚少。在本研究中,我们结合全内反射荧光(TIRF)显微镜和分子动力学(MD)模拟,研究了构巢曲霉的驱动蛋白-5运动蛋白BimC与微管的结合。TIRF显微镜实验表明,将运动缓冲液中KCl的浓度从0 mM增加到150 mM会完全消除BimC与微管结合的能力。与这一实验结果一致,MD模拟表明,与0 mM KCl相比,在150 mM KCl时,BimC与微管之间的静电相互作用强度显著降低。此外,我们在BimC-微管界面鉴定了几个盐桥,BimC上带正电的残基与微管蛋白异二聚体上带负电的残基相互作用。这些结果为静电相互作用在驱动蛋白-5与微管结合中的作用提供了机制上的见解,增进了我们对驱动蛋白-5运动分子基础的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82e5/11962974/e2e404800f63/bbaf144f1.jpg

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