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迷迭香酸在抑制乳腺癌进展中作用的计算机模拟研究

In-silico study of rosmarinic acid roles in inhibiting breast cancer progression.

作者信息

Mahayana Ngakan Putu Krishna, Dwi Sutanegara Ngurah Bagus Agung Surya Nanda Jayesvara, Mahardana Made Dwinanda Prabawa, Wihandani Desak Made

机构信息

School of Medicine, Faculty of Medicine, Udayana University, Denpasar, Bali, Indonesia.

Department of Biochemistry, Faculty of Medicine, Udayana University, Jl. PB. Sudirman, Denpasar, 80232, Bali, Indonesia.

出版信息

Biomedicine (Taipei). 2025 Mar 1;15(1):23-30. doi: 10.37796/2211-8039.1638. eCollection 2025.

Abstract

BACKGROUND

Breast cancer is the highest cancer incidence in the world. Chemotherapy is currently one of the main breast cancer treatments besides surgery. It is capable of evolving to become resistant to chemotherapy agents. Chemotherapy also has significant side effects. Rosmarinic acid could become an anti-cancer agent candidate for the treatment of breast cancer, but its molecular mechanism is still unclear.

AIM

This study aimed to clarify the molecular mechanism of rosmarinic acid anti-breast cancer properties via an in-silico study.

METHODS

Web-based screening tools such as SwissTargetPrediction, Similarity Ensemble Approach (SEA), and TargetNet were used as initial screening. From web-based screening, potential proteins that interact with rosmarinic acid could be determined. Intersected proteins from 3 web-based screenings were assessed via literature review. We found 11 intersected proteins, and 6 of 11 proteins are involved in breast cancer development and progression. Those 6 proteins are MMP-1, MMP-2, MMP-9, MMP-12, aldose reductase, and M-phase Inducer Phosphatase 2 (CDC25B). Then molecular docking using Autodock 4.6.2 was used in ligand and protein interaction simulation. Those 6 proteins were selected as macromolecules in the docking study.

RESULTS

Based on the docking result, we found that rosmarinic acid can bind MMP-1, MMP2, MMP-9, and MMP-12 active sites. The binding profile of rosmarinic acid with aldose reductase has similarities with other confirmed inhibitors. Docking with CDC25B showed that rosmarinic acid also binds in the same place as cyclin-dependent kinases (CDKs).

CONCLUSION

The ability of rosmarinic acid to inhibit MMP-1, MMP-2, MMP-9, aldose reductase, and CDC25B activity may underlie how rosmarinic acid is able to inhibit the development of breast cancer.

摘要

背景

乳腺癌是全球发病率最高的癌症。化疗是目前除手术外乳腺癌的主要治疗方法之一。它可能会逐渐对化疗药物产生耐药性。化疗也有显著的副作用。迷迭香酸可能成为治疗乳腺癌的抗癌药物候选物,但其分子机制仍不清楚。

目的

本研究旨在通过计算机模拟研究阐明迷迭香酸抗乳腺癌特性的分子机制。

方法

使用基于网络的筛选工具,如瑞士靶点预测、相似性集合方法(SEA)和靶点网络进行初步筛选。通过基于网络的筛选,可以确定与迷迭香酸相互作用的潜在蛋白质。通过文献综述评估来自3种基于网络筛选的交集蛋白质。我们发现了11种交集蛋白质,其中11种蛋白质中的6种参与乳腺癌的发生和发展。这6种蛋白质是基质金属蛋白酶-1(MMP-1)、基质金属蛋白酶-2(MMP-2)、基质金属蛋白酶-9(MMP-9)、基质金属蛋白酶-12(MMP-12)、醛糖还原酶和M期诱导磷酸酶2(CDC25B)。然后使用Autodock 4.6.2进行分子对接,用于配体和蛋白质相互作用模拟。在对接研究中选择这6种蛋白质作为大分子。

结果

基于对接结果,我们发现迷迭香酸可以结合MMP-1、MMP2、MMP-9和MMP-12的活性位点。迷迭香酸与醛糖还原酶的结合模式与其他已证实的抑制剂相似。与CDC25B对接表明,迷迭香酸也与细胞周期蛋白依赖性激酶(CDK)在同一位置结合。

结论

迷迭香酸抑制MMP-1、MMP-2、MMP-9、醛糖还原酶和CDC25B活性的能力可能是迷迭香酸能够抑制乳腺癌发展的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42bd/11959963/32b35a65b857/bmed-15-01-023f1.jpg

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