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Stemness-Relevant Gene Signature for Chemotherapeutic Response and Prognosis Prediction in Ovarian Cancer.

作者信息

Zhou Kaixia, Ma Xiaolu, Yan Tianqing, Zheng Hui, Xie Suhong, Guo Lin, Lu Renquan

机构信息

Department of Clinical Laboratory, Fudan University Shanghai Cancer Center, Shanghai 200032, China.

Department of Oncology, Shanghai Medical College, Fudan University, Shanghai 200032, China.

出版信息

Stem Cells Int. 2025 Mar 27;2025:2505812. doi: 10.1155/sci/2505812. eCollection 2025.


DOI:10.1155/sci/2505812
PMID:40182754
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11968171/
Abstract

Ovarian cancer (OC) stands as the leading cause of cancer-related deaths among women, globally, owing to metastasis and acquired chemoresistance. Cancer stem cells (CSCs) are accountable for tumor initiation and exhibit resistance to chemotherapy and radiotherapy. Identifying stemness-related biomarkers that can aid in the stratification of risk and the response to chemotherapy for OC is feasible and critical. Gene expression and clinical data of patients with OC were downloaded from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) database. Four thousand three hundred seventeen stemness-related genes (SRGs) were acquired from the StemChecker database. TCGA was used as the training dataset, while GSE30161 served as validation dataset. Univariate Cox regression analysis was used to identify overall survival (OS)-related SRGs, and multivariate Cox regression analysis and random survival forest analysis were used for generating stemness-relevant prognostic model. Kaplan-Meier plots were used to visualize survival functions. Receiver operating characteristic (ROC) curves were used to assess the prognostic predictive ability of SRG-based features. Associations between signature score, tumor immune phenotype, and response to chemotherapy were analyzed via TIMER 2.0 and oncoPredict R package, respectively. A cohort of Shanghai Cancer Center was employed to verify the predictive robustness of the signature with respect to chemotherapy response. Seven SRGs (actin-binding Rho activating C-terminal like (ABRACL), growth factor receptor bound protein 7 (GRB7), Lin-28 homolog B (LIN28B), lipolysis stimulated lipoprotein receptor (LSR), neuromedin U (NMU), Solute Carrier Family 4 Member 11 (SLC4A11), and thymocyte selection associated family member 2 (THEMIS2)) were found to have excellent predictive potential for patient survival. Patients in the high stemness risk group presented a poorer prognosis (  < 0.0001), and patients with lower stemness scores were more likely to benefit from chemotherapy. Several tumorigenesis pathways, such as mitotic spindle and glycolysis, were enriched in the high stemness risk group. Tumor with high-risk scores tended to be in a status of relatively high tumor infiltration of CD4+ T cells, neutrophils, and macrophages, while tumor with low-risk scores tended to be in a status of relatively high tumor infiltration of CD8+ T cells. The stemness-relevant prognostic gene signature has the potential to serve as a clinically helpful biomarker for guiding the management of OC patients.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/a92256f59c57/SCI2025-2505812.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/4dc0e0629c16/SCI2025-2505812.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/fc2731105a63/SCI2025-2505812.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/bffe14db7209/SCI2025-2505812.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/5cb8230ff864/SCI2025-2505812.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/6f262907d219/SCI2025-2505812.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/019a47342262/SCI2025-2505812.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/50cfc50177b8/SCI2025-2505812.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/a92256f59c57/SCI2025-2505812.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/4dc0e0629c16/SCI2025-2505812.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/fc2731105a63/SCI2025-2505812.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/bffe14db7209/SCI2025-2505812.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/5cb8230ff864/SCI2025-2505812.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/6f262907d219/SCI2025-2505812.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/019a47342262/SCI2025-2505812.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/50cfc50177b8/SCI2025-2505812.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11968171/a92256f59c57/SCI2025-2505812.008.jpg

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Stemness-Relevant Gene Signature for Chemotherapeutic Response and Prognosis Prediction in Ovarian Cancer.

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引用本文的文献

[1]
SLC4A11 is a targetable marker correlated with therapeutic responses in ovarian cancer.

J Ovarian Res. 2025-7-29

本文引用的文献

[1]
Stemness in solid malignancies: coping with immune attack.

Nat Rev Cancer. 2025-1

[2]
Cancer Stem Cells and the Tumor Microenvironment in Tumor Drug Resistance.

Stem Cell Rev Rep. 2023-10

[3]
Up-regulated GRB7 protein in gastric cancer cells correlates with clinical properties and increases proliferation and stem cell properties.

Front Oncol. 2023-1-4

[4]
CircNFIX stimulates the proliferation, invasion, and stemness properties of ovarian cancer cells by enhancing SH3RF3 mRNA stability via binding LIN28B.

Kaohsiung J Med Sci. 2023-3

[5]
The Value of the Stemness Index in Ovarian Cancer Prognosis.

Genes (Basel). 2022-5-31

[6]
Actin-binding Rho activating C-terminal like (ABRACL) transcriptionally regulated by MYB proto-oncogene like 2 (MYBL2) promotes the proliferation, invasion, migration and epithelial-mesenchymal transition of breast cancer cells.

Bioengineered. 2022-4

[7]
Novel function of THEMIS2 in the enhancement of cancer stemness and chemoresistance by releasing PTP1B from MET.

Oncogene. 2022-2

[8]
Knockdown of growth factor receptor bound protein 7 suppresses angiogenesis by inhibiting the secretion of vascular endothelial growth factor A in ovarian cancer cells.

Bioengineered. 2021-12

[9]
Ovarian Cancer and Cancer Stem Cells-Cellular and Molecular Characteristics, Signaling Pathways, and Usefulness as a Diagnostic Tool in Medicine and Oncology.

Cancers (Basel). 2021-8-19

[10]
Cancer stem cell-immune cell crosstalk in tumour progression.

Nat Rev Cancer. 2021-8

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