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在一组源自五种家鼠野生品系的细胞系中永生的表型基因组资源。

Phenogenomic resources immortalized in a panel of wild-derived strains of five species of house mice.

作者信息

Piálek Jaroslav, Ďureje Ľudovít, Hiadlovská Zuzana, Kreisinger Jakub, Aghová Tatiana, Bryjová Anna, Čížková Dagmar, de Bellocq Joëlle Goüy, Hejlová Helena, Janotová Kateřina, Martincová Iva, Orth Annie, Piálková Jana, Pospíšilová Iva, Rousková Ludmila, Bímová Barbora Vošlajerová, Pfeifle Christine, Tautz Diethard, Bonhomme François, Forejt Jiří, Macholán Miloš, Klusáčková Pavla

机构信息

Studenec Research Facility, Institute of Vertebrate Biology, Czech Academy of Sciences, Brno, Czech Republic.

Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Brno, Czech Republic.

出版信息

Sci Rep. 2025 Apr 8;15(1):12060. doi: 10.1038/s41598-025-86505-x.

DOI:10.1038/s41598-025-86505-x
PMID:40199997
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11978780/
Abstract

The house mouse, Mus musculus, is a widely used animal model in biomedical research, with classical laboratory strains (CLS) being the most frequently employed. However, the limited genetic variability in CLS hinders their applicability in evolutionary studies. Wild-derived strains (WDS), on the other hand, provide a suitable resource for such investigations. This study quantifies genetic and phenotypic data of 101 WDS representing 5 species, 3 subspecies, and 8 natural Y consomic strains and compares them with CLS. Genetic variability was estimated using whole mtDNA sequences, the Prdm9 gene, and copy number variation at two sex chromosome-linked genes. WDS exhibit a large natural variation with up to 2173 polymorphic sites in mitogenomes, whereas CLS display 92 sites. Moreover, while CLS have two Prdm9 alleles, WDS harbour 46 different alleles. Although CLS resemble M. m. domesticus and M. m. musculus WDS, they differ from them in 10 and 14 out of 16 phenotypic traits, respectively. The results suggest that WDS can be a useful tool in evolutionary and biomedical studies with great potential for medical applications.

摘要

家鼠(Mus musculus)是生物医学研究中广泛使用的动物模型,其中经典实验室品系(CLS)是最常使用的。然而,CLS有限的遗传变异性阻碍了它们在进化研究中的适用性。另一方面,野生衍生品系(WDS)为这类研究提供了合适的资源。本研究对代表5个物种、3个亚种和8个天然Y染色体代换系的101个WDS的遗传和表型数据进行了量化,并将它们与CLS进行了比较。使用完整的线粒体DNA序列、Prdm9基因以及两个性染色体连锁基因的拷贝数变异来估计遗传变异性。WDS表现出很大的自然变异,线粒体基因组中多达2173个多态性位点,而CLS有92个位点。此外,虽然CLS有两个Prdm9等位基因,但WDS有46个不同的等位基因。尽管CLS与小家鼠(M. m. domesticus)和小鼠(M. m. musculus)WDS相似,但在16个表型特征中,它们分别与小家鼠和小鼠WDS有10个和14个不同。结果表明,WDS在进化和生物医学研究中可能是一种有用的工具,具有很大的医学应用潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/4f6d686ab612/41598_2025_86505_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/6e38f39c0909/41598_2025_86505_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/19ade854b487/41598_2025_86505_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/b48412be73d2/41598_2025_86505_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/911b0aa24559/41598_2025_86505_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/3e10f49875a5/41598_2025_86505_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/4f6d686ab612/41598_2025_86505_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/6e38f39c0909/41598_2025_86505_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/19ade854b487/41598_2025_86505_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/b48412be73d2/41598_2025_86505_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/911b0aa24559/41598_2025_86505_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/3e10f49875a5/41598_2025_86505_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdc2/11978780/4f6d686ab612/41598_2025_86505_Fig6_HTML.jpg

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本文引用的文献

1
Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models.《回归荒野:一种新的野生来源近交系资源扩展了实验室小鼠模型的基因组和表型多样性》
PLoS Genet. 2024 Apr 10;20(4):e1011228. doi: 10.1371/journal.pgen.1011228. eCollection 2024 Apr.
2
Multiple Genomic Landscapes of Recombination and Genomic Divergence in Wild Populations of House Mice-The Role of Chromosomal Fusions and Prdm9.野生小家鼠群体中的重组和基因组分化的多个基因组景观——染色体融合和 Prdm9 的作用。
Mol Biol Evol. 2024 Apr 2;41(4). doi: 10.1093/molbev/msae063.
3
Natural variation in the zinc-finger-encoding exon of Prdm9 affects hybrid sterility phenotypes in mice.
锌指编码外显子的自然变异影响小鼠杂种不育表型。
Genetics. 2024 Mar 6;226(3). doi: 10.1093/genetics/iyae004.
4
Variation in mouse chemical signals is genetically controlled and environmentally modulated.老鼠的化学信号变化是由遗传控制和环境调节的。
Sci Rep. 2023 May 26;13(1):8573. doi: 10.1038/s41598-023-35450-8.
5
A draft human pangenome reference.人类泛基因组参考草图。
Nature. 2023 May;617(7960):312-324. doi: 10.1038/s41586-023-05896-x. Epub 2023 May 10.
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A gene copy number arms race in action: X,Y-chromosome transmission distortion across a species barrier.一个基因拷贝数军备竞赛正在进行:跨越物种屏障的 X、Y 染色体传递扭曲。
Evolution. 2023 Jun 1;77(6):1330-1340. doi: 10.1093/evolut/qpad051.
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Taxonomic assessment of two wild house mouse subspecies using whole-genome sequencing.利用全基因组测序对两种野生家鼠亚种进行分类评估。
Sci Rep. 2022 Dec 2;12(1):20866. doi: 10.1038/s41598-022-25420-x.
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Whole-genome sequencing reveals the genetic mechanisms of domestication in classical inbred mice.全基因组测序揭示了经典近交系小鼠驯化的遗传机制。
Genome Biol. 2022 Sep 26;23(1):203. doi: 10.1186/s13059-022-02772-1.
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Population structure and inbreeding in wild house mice (Mus musculus) at different geographic scales.不同地理尺度下野生小家鼠(Mus musculus)的种群结构和近亲繁殖。
Heredity (Edinb). 2022 Sep;129(3):183-194. doi: 10.1038/s41437-022-00551-z. Epub 2022 Jun 28.