Lei Min, Zhang Yaping, Yu Yijin, Wang Gaojian, Hu Nianqiang, Xie Junran
Department of Anesthesiology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, No. 3 East Qing Chun Road, Hangzhou, 310016, Zhejiang, China.
Sci Rep. 2025 Apr 12;15(1):12635. doi: 10.1038/s41598-025-93685-z.
Sepsis is closely linked to immunity. Our research aimed to identify key genes associated with sepsis immunity utilizing single-cell RNA sequencing (scRNA-seq) data. This study obtained the GSE167363 and GSE54514 datasets from the Gene Expression Omnibus (GEO). The GSE167363 dataset was subjected to cluster analysis, cell proportion analysis, cell interaction analysis, and gene set enrichment analysis (GSEA). The differentially expressed genes (DEGs) of CD8+ T cells were intersected with the DEGs in the GSE54514 dataset, and key genes related to immunity in sepsis patients were identified through Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. Finally, we validated the gene expression levels in a mouse model of sepsis caused by cecum ligation and puncture (CLP). Findings indicated that intercellular communication of Cytotoxic CD8+ T cells was reduced in the sepsis survivors compared to non-survivors. The expression of 3 down-regulated key DEGs (ITGB2, SELL and ICAM3) was negatively correlated with the abundance of CD8+ T cells. Moreover, Cytotoxic CD8+ T cells with low expression of ITGB2, SELL and ICAM3 were more adverse to the survival of sepsis as compared to those with high expression of the above genes. These genes may predict increased survival in sepsis by regulating intercellular communication in cytotoxic CD8+ T cells, suggesting that they are potential therapeutic targets for improving sepsis prognosis.
脓毒症与免疫密切相关。我们的研究旨在利用单细胞RNA测序(scRNA-seq)数据鉴定与脓毒症免疫相关的关键基因。本研究从基因表达综合数据库(GEO)获取了GSE167363和GSE54514数据集。对GSE167363数据集进行聚类分析、细胞比例分析、细胞相互作用分析和基因集富集分析(GSEA)。将CD8 + T细胞的差异表达基因(DEGs)与GSE54514数据集中的DEGs进行交集分析,并通过京都基因与基因组百科全书(KEGG)分析确定脓毒症患者中与免疫相关的关键基因。最后,我们在盲肠结扎和穿刺(CLP)所致脓毒症小鼠模型中验证了基因表达水平。结果表明,与非幸存者相比,脓毒症幸存者中细胞毒性CD8 + T细胞的细胞间通讯减少。3个下调的关键DEGs(ITGB2、SELL和ICAM3)的表达与CD8 + T细胞的丰度呈负相关。此外,与上述基因高表达的细胞毒性CD8 + T细胞相比,ITGB2、SELL和ICAM3低表达的细胞毒性CD8 + T细胞对脓毒症的生存更不利。这些基因可能通过调节细胞毒性CD8 + T细胞中的细胞间通讯来预测脓毒症患者生存率的提高,表明它们是改善脓毒症预后的潜在治疗靶点。
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