Sarao Sukhvir K, Sandhu Armaan K, Hanson Ryan L, Govil Tanvi, Brözel Volker S
Department of Biology and Microbiology, South Dakota State University, 1224 Medary Avenue, Brookings, SD 57007, United States.
Karen M. Swindler Department of Chemical and Biological Engineering, South Dakota Mines, 501 E St Joseph Street, Rapid City, SD 57701, United States.
ISME Commun. 2024 Mar 28;5(1):ycaf054. doi: 10.1093/ismeco/ycaf054. eCollection 2025 Jan.
Bacteria growing in liquid culture are assumed to be homogenous in phenotype. Characterization of individual cells shows that some clonal cultures contain more than one phenotype. Bacteria appear to employ bet hedging where various phenotypes help the species survive in diverse niches in soil and rhizosphere environments. We asked whether the agriculturally significant bacterium USDA 110, which fixes nitrogen with soybean plants, displays phenotypic heterogeneity when grown under laboratory conditions. We observed differential binding of sugar-specific lectins in isogenic populations, revealing differential surface properties. We employed Percoll™ density gradient centrifugation to separate clonal populations of exponential and stationary phase into four fractions and characterized their phenotype by proteomics. Specific phenotypes were then characterized in detail. Fractions varied by cell size, polyhydroxyalkanoate content, lectin binding profile, growth rate, cellular adenosine triphosphate, chemotaxis, and respiration activity. Phenotypes were not heritable because the specific buoyant densities of fractions equilibrated within 10 generations. We propose that heterogeneity helps slow growing proliferate and maintain populations in the different environments in soil and the rhizosphere.
液体培养中的细菌被认为在表型上是同质的。对单个细胞的表征表明,一些克隆培养物包含不止一种表型。细菌似乎采用了赌注规避策略,其中各种表型有助于该物种在土壤和根际环境的不同生态位中生存。我们询问具有重要农业意义的、与大豆植物共生固氮的细菌USDA 110在实验室条件下生长时是否表现出表型异质性。我们观察到同基因群体中糖特异性凝集素的差异结合,揭示了不同的表面特性。我们采用Percoll™密度梯度离心法将指数期和稳定期的克隆群体分离成四个组分,并通过蛋白质组学对其表型进行表征。然后对特定表型进行了详细表征。各组分在细胞大小、聚羟基脂肪酸酯含量、凝集素结合谱、生长速率、细胞三磷酸腺苷、趋化性和呼吸活性方面存在差异。表型不具有遗传性,因为各组分的特定浮力密度在10代内达到平衡。我们认为,异质性有助于生长缓慢的细菌在土壤和根际的不同环境中增殖并维持种群数量。