Martin Donna-Lee Pamela, Heathfield Laura Jane
Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
J Forensic Sci. 2025 Jul;70(4):1227-1248. doi: 10.1111/1556-4029.70057. Epub 2025 Apr 18.
Many forensic laboratories have conducted sequence-based population studies to support the integration of massively parallel sequencing (MPS). However, the data remain limited concerning African populations. MPS enhances allelic representation compared to CE methods. It is hypothesized that this increase will be more pronounced for African populations due to their greater genetic diversity. A systematic review and meta-analysis were conducted to compile data from population genetic studies using the ForenSeq™ DNA Signature Prep kit, frequently employed in forensic MPS population studies. The aim of the review was to gain insight into global forensic sequence-based population data, focusing on African and underrepresented populations. The search spanned three databases, resulting in 582 records, where 40 articles met inclusion criteria for the systematic review and 20 qualified for the meta-analysis. The meta-analysis aimed to quantify the increase in genetic variation in autosomal short tandem repeat (A-STR) markers using allele counts and random match probability (RMP). Most population studies were conducted in high-income countries (65%, 26/40), with none from Africa. Only 14 out of 40 studies included concordance data, with 13 of these reporting rates above 99%. The meta-analysis covered 35 population groups and found that of the 27 A-STR markers evaluated, mean allele counts increased by 53.08% from length-to-sequence-based analyses. African ancestry groups showed the highest increase in allele counts and the biggest reduction in RMP. Despite substantial genetic diversity in African populations, their representation in MPS studies is minimal. Addressing this gap is crucial to justify further research in African countries.
许多法医实验室开展了基于序列的群体研究,以支持大规模平行测序(MPS)技术的整合。然而,有关非洲人群的数据仍然有限。与毛细管电泳(CE)方法相比,MPS增强了等位基因的代表性。据推测,由于非洲人群具有更高的遗传多样性,这种增加在非洲人群中会更加显著。我们进行了一项系统综述和荟萃分析,以汇总使用ForenSeq™ DNA Signature Prep试剂盒进行的群体遗传学研究数据,该试剂盒常用于法医MPS群体研究。该综述的目的是深入了解全球基于法医序列的群体数据,重点关注非洲和代表性不足的人群。检索了三个数据库,共获得582条记录,其中40篇文章符合系统综述的纳入标准,20篇符合荟萃分析的标准。荟萃分析旨在使用等位基因计数和随机匹配概率(RMP)来量化常染色体短串联重复序列(A-STR)标记中遗传变异的增加情况。大多数群体研究在高收入国家进行(65%,26/40),没有来自非洲的研究。40项研究中只有14项纳入了一致性数据,其中13项报告的一致性率高于99%。荟萃分析涵盖了35个人群组,发现在评估的27个A-STR标记中,从基于长度分析到基于序列分析,平均等位基因计数增加了53.08%。非洲血统群体的等位基因计数增加最多,RMP降低幅度最大。尽管非洲人群具有丰富的遗传多样性,但他们在MPS研究中的代表性却微乎其微。填补这一空白对于在非洲国家开展进一步研究至关重要。