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Identification of telomere-related diagnostic markers in osteoarthritis based on bioinformatics analysis and machine learning.

作者信息

Xu Sheng, Ye Jia, Cai Xiaochong

机构信息

Department of Orthopaedics, Jinhua Wenrong Hospital, Jinhua 321000, Zhejiang, China.

出版信息

Korean J Physiol Pharmacol. 2025 May 1;29(3):359-372. doi: 10.4196/kjpp.24.322.


DOI:10.4196/kjpp.24.322
PMID:40254557
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12012318/
Abstract

Osteoarthritis (OA) is one of the most prevalent joint disorders, with aging considered a primary, irreversible factor contributing to its progression. Telomere-related cellular senescence may be a crucial factor influencing the OA process, yet biomarkers for OA based on telomere-related genes have not been clearly identified. The datasets GSE51588, GSE12021, and GSE55457 were retrieved from the Gene Expression Omnibus database. Initially, R software was utilized to identify differentially expressed genes between OA and normal samples. Subsequently, differentially expressed telomere-related genes (DETMRGs) were obtained, and their functional enrichment was analyzed. Feature genes for OA diagnosis were selected from DETMRGs using a combination of least absolute shrinkage and selection operator, support vector machine-recursive feature elimination, and Random Forest algorithms. The diagnostic value of these feature genes was then validated through receiver operating characteristic (ROC) curves and decision curve analysis. Additionally, CIBERSORT and xCell were employed to assess the infiltration of immune cells in OA tissues. Finally, potential drugs targeting candidate genes were predicted. Three telomere-related genes, , , and , have been identified as biomarkers for OA diagnosis and were confirmed through ROC diagnostic tests. The immune infiltration of mast cells, neutrophils, common lymphoid precursors, and eosinophils associated with , , and was reduced. Recognizing telomere-related genes , , and as potential diagnostic biomarkers for OA is significant, as it offers valuable insights into the role of telomere-related genes in OA. This discovery also provides valuable information for the diagnosis and treatment of OA.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/8f2f948ec115/kjpp-29-3-359-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/0c7fef3b7495/kjpp-29-3-359-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/47a090c0e4dc/kjpp-29-3-359-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/0d205bb64c78/kjpp-29-3-359-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/988986b688ba/kjpp-29-3-359-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/c665288ebb01/kjpp-29-3-359-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/441dac011695/kjpp-29-3-359-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/8f2f948ec115/kjpp-29-3-359-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/0c7fef3b7495/kjpp-29-3-359-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/47a090c0e4dc/kjpp-29-3-359-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/0d205bb64c78/kjpp-29-3-359-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/988986b688ba/kjpp-29-3-359-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/c665288ebb01/kjpp-29-3-359-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/441dac011695/kjpp-29-3-359-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471c/12012318/8f2f948ec115/kjpp-29-3-359-f7.jpg

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[1]
Identification of telomere-related diagnostic markers in osteoarthritis based on bioinformatics analysis and machine learning.

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[2]
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本文引用的文献

[1]
Solute Carrier Transporters in Synovial Membrane and Hoffa's Pad of Patients with Rheumatoid Arthritis.

Arch Immunol Ther Exp (Warsz). 2024-1-1

[2]
Sex-specific differences in telomere length of patients with primary knee osteoarthritis.

J Cell Mol Med. 2024-2

[3]
SAPHO syndrome: current clinical, diagnostic and treatment approaches.

Rheumatol Int. 2024-11

[4]
Ferroptosis-related genes LPCAT3 and PGD are potential diagnostic biomarkers for osteoarthritis.

J Orthop Surg Res. 2023-9-19

[5]
The combined signatures of telomere and immune cell landscape provide a prognostic and therapeutic biomarker in glioma.

Front Immunol. 2023

[6]
Imaging telomerase reverse transcriptase expression in oligodendrogliomas using hyperpolarized δ-[1-C]-gluconolactone.

Neurooncol Adv. 2023-7-21

[7]
PiRNA hsa_piR_019914 Promoted Chondrocyte Anabolic Metabolism By Inhibiting LDHA-Dependent ROS Production.

Cartilage. 2024-9

[8]
Noncanonical Pyroptosis Triggered by Macrophage-Derived Extracellular Vesicles in Chondrocytes Leading to Cartilage Catabolism in Osteoarthritis.

Arthritis Rheumatol. 2023-8

[9]
The role of autophagy in bone metabolism and clinical significance.

Autophagy. 2023-9

[10]
The multifaceted role of mast cells in joint inflammation and arthritis.

Osteoarthritis Cartilage. 2023-5

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