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地方品种燕麦(Avena sativa L.)种质的全球集合是适应性变异、关联作图和性状部署的发现资源。

A global assembly of landrace oat (Avena sativa L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment.

作者信息

Rahman Afrina, Sapkota Suraj, Ajayi-Moses Oluwatayo, Nandety Raja S, Fiedler Jason D, Mohajeri Naraghi Sepehr, McMullen Michael S, Bockelman Harold E, Esvelt Klos Kathy, Carlson Craig H

机构信息

Department of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.

Cereal Crops Improvement Research Unit, Edward T. Schafer Agricultural Research Center, United States Department of Agriculture - Agricultural Research Service, 1616 Albrecht Blvd. N., Fargo, ND 58102, USA.

出版信息

G3 (Bethesda). 2025 Jun 4;15(6). doi: 10.1093/g3journal/jkaf093.

DOI:10.1093/g3journal/jkaf093
PMID:40273399
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12134994/
Abstract

Crop adaptation to environmental change will require genetic resources that are different from those currently deployed. The rapid global shift to both warmer temperatures and unpredictable atmospheric events must be considered in developing new breeding populations for local environments. Oats (Avena spp.) are annual grasses that represent a diversity of species and ploidy levels. The most notable, spring oat (Avena sativa L.), is a heart-healthy and gluten-free cereal crop that is grown worldwide as a source of food, feed, and cosmetics products. In the past decade, global oat production has been increasingly challenged by environmental stress and its economic value has suffered due to competition with other high-value grain crops. Although genomic resources are growing for spring oat, there is limited information about the landraces that served as founders to modern varieties. To improve knowledge of adaptive genetic variation and phenotypic diversity of spring oat founders, a set of 758 global A. sativa landrace accessions from the USDA-ARS National Small Grains Collection was investigated, herein dubbed the "Oat Landrace Diversity (OLD) Panel." High-depth genotyping-by-sequencing was conducted to assess genetic diversity, perform genome-wide association mapping for environmental variables, and provide insight into whether quantitative trait loci identified in the OLD Panel have been deployed in modern cultivar populations. Finally, we discuss the importance of leveraging genetic variation attributable to environmental adaptation to reinforce plant breeding programs from ecological instability.

摘要

作物对环境变化的适应将需要与目前所利用的不同的遗传资源。在为当地环境培育新的育种群体时,必须考虑全球迅速向更温暖的气温和不可预测的大气事件转变的情况。燕麦(燕麦属)是一年生禾本科植物,具有多种物种和倍性水平。最著名的春燕麦(Avena sativa L.)是一种有益心脏健康且无麸质的谷类作物,作为食物、饲料和化妆品原料在全球种植。在过去十年中,全球燕麦生产日益受到环境压力的挑战,并且由于与其他高价值谷物作物的竞争,其经济价值也受到了影响。尽管春燕麦的基因组资源在不断增加,但关于作为现代品种基础的地方品种的信息却很有限。为了增进对春燕麦基础品种的适应性遗传变异和表型多样性的了解,对美国农业部农业研究局国家小粒谷物收集库中的758份全球A. sativa地方品种种质进行了调查,在此称为“燕麦地方品种多样性(OLD)群体”。通过高深度测序进行基因分型,以评估遗传多样性,对环境变量进行全基因组关联作图,并深入了解在OLD群体中鉴定出的数量性状位点是否已应用于现代栽培品种群体中。最后,我们讨论了利用归因于环境适应的遗传变异来加强植物育种计划以应对生态不稳定的重要性。

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本文引用的文献

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Sci Data. 2024 Apr 22;11(1):412. doi: 10.1038/s41597-024-03248-6.
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Genome-Wide Analysis of the Oat () Gene Family Reveals Its Identification, Evolution, and Response to Abiotic Stress.全基因组分析揭示了燕麦()基因家族的鉴定、进化及其对非生物胁迫的响应。
Int J Mol Sci. 2024 Feb 15;25(4):2305. doi: 10.3390/ijms25042305.
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Genome resequencing reveals independent domestication and breeding improvement of naked oat.基因组重测序揭示了裸燕麦的独立驯化和选育改良。
Gigascience. 2022 Dec 28;12. doi: 10.1093/gigascience/giad061. Epub 2023 Aug 1.
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Population structure analysis and genome-wide association study of a hexaploid oat landrace and cultivar collection.六倍体燕麦地方品种和栽培品种群体的群体结构分析及全基因组关联研究
Front Plant Sci. 2023 Mar 21;14:1131751. doi: 10.3389/fpls.2023.1131751. eCollection 2023.
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Modeling of the potential geographical distribution of naked oat under climate change.气候变化下裸燕麦潜在地理分布的建模
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Oat chromosome and genome evolution defined by widespread terminal intergenomic translocations in polyploids.燕麦染色体和基因组进化由多倍体中广泛存在的末端基因组间易位所定义。
Front Plant Sci. 2022 Nov 22;13:1026364. doi: 10.3389/fpls.2022.1026364. eCollection 2022.
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Genome-Wide Identification and Expression Analyses of the Chitinase Gene Family in Response to White Mold and Drought Stress in Soybean ().大豆中几丁质酶基因家族响应白霉病和干旱胁迫的全基因组鉴定与表达分析()。
Life (Basel). 2022 Aug 29;12(9):1340. doi: 10.3390/life12091340.
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Archetypes of inflorescence: genome-wide association networks of panicle morphometric, growth, and disease variables in a multiparent oat population.花序原型:多亲本燕麦群体中穗形态计量、生长和疾病变量的全基因组关联网络。
Genetics. 2023 Feb 9;223(2). doi: 10.1093/genetics/iyac128.
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A reference-anchored oat linkage map reveals quantitative trait loci conferring adult plant resistance to crown rust (Puccinia coronata f. sp. avenae).一个基于参考图谱的燕麦连锁图谱揭示了赋予成株对冠锈病(燕麦冠锈菌)抗性的数量性状位点。
Theor Appl Genet. 2022 Oct;135(10):3307-3321. doi: 10.1007/s00122-022-04128-6. Epub 2022 Aug 27.
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