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PAN细胞焦亡及其相关基因在急性肝衰竭中的作用:来自生物信息学分析和动物实验验证的最新见解

Roles of PANoptosis and related genes in acute liver failure: neoteric insight from bioinformatics analysis and animal experiment verification.

作者信息

Ge Tiantian, Chen Yao, Pang Lantian, Shao Junwei, Chen Zhi

机构信息

State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China.

Department of Infectious Diseases, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310009, China.

出版信息

J Zhejiang Univ Sci B. 2025 Apr 23;26(4):353-370. doi: 10.1631/jzus.B2300678.

Abstract

: PANoptosis has the features of pyroptosis, apoptosis, and necroptosis. Numerous studies have confirmed the diverse roles of various types of cell death in acute liver failure (ALF), but limited attention has been given to the crosstalk among them. In this study, we aimed to explore the role of PANoptosis in ALF and uncover new targets for its prevention or treatment. : Three ALF-related datasets (GSE14668, GSE62029, and GSE74000) were downloaded from the Gene Expression Omnibus (GEO) database to identify differentially expressed genes (DEGs). Hub genes were identified through intersecting DEGs, genes obtained from weighted gene co-expression network analysis (WGCNA), and genes related to PANoptosis. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), protein‍‒‍protein interaction (PPI) analyses and gene set enrichment analysis (GSEA) were performed to determine functional roles. Verification was performed using an ALF mouse model. : Our results showed that expression of seven hub genes (B-cell lymphoma-2-modifying factor (), B-cell lymphoma-2-interacting protein 3-like (), Caspase-1 (), receptor-interacting protein kinase 3 (), uveal autoantigen with coiled-coil domains and ankyrin repeats protein (), uncoordinated-5 homolog B receptor (), and Z-DNA-binding protein 1 ()) was up-regulated in liver samples of patients. However, in the ALF mouse model, the expression of BNIP3L, RIPK3, phosphorylated RIPK3 (P-RIPK3), UACA, and cleaved caspase-1 was up-regulated, while the expression of CASP1 and UNC5B was down-regulated. The expression of ZBP1 and BMF increased only during the development of ALF, and there was no significant change in the end stage. Immunofluorescence of mouse liver tissue showed that macrophages expressed all seven markers. Western blot results showed that pyroptosis, apoptosis, and necroptosis were always involved in lipopolysaccharide (LPS)/ d-galactosamine (d-gal)‍-induced ALF mice. The ALF cell model showed that bone marrow-derived macrophages (BMDMs) form PANoptosomes after LPS stimulation. : Our results suggest that PANoptosis of macrophages promotes the development of ALF. The seven new ALF biomarkers identified and validated in this study may contribute to further investigation of diagnostic markers or novel therapeutic targets of ALF.

摘要

PAN细胞焦亡具有细胞焦亡、凋亡和坏死性凋亡的特征。众多研究证实了各种类型的细胞死亡在急性肝衰竭(ALF)中的不同作用,但对它们之间的相互作用关注有限。在本研究中,我们旨在探讨PAN细胞焦亡在ALF中的作用,并揭示其预防或治疗的新靶点。

从基因表达综合数据库(GEO)下载了三个与ALF相关的数据集(GSE14668、GSE62029和GSE74000),以鉴定差异表达基因(DEG)。通过交叉DEG、从加权基因共表达网络分析(WGCNA)获得的基因以及与PAN细胞焦亡相关的基因来鉴定枢纽基因。进行基因本体(GO)、京都基因与基因组百科全书(KEGG)、蛋白质-蛋白质相互作用(PPI)分析和基因集富集分析(GSEA)以确定功能作用。使用ALF小鼠模型进行验证。

我们的结果表明,七个枢纽基因(B细胞淋巴瘤-2修饰因子()、B细胞淋巴瘤-2相互作用蛋白3样()、半胱天冬酶-1()、受体相互作用蛋白激酶3()、具有卷曲螺旋结构域和锚蛋白重复序列的葡萄膜自身抗原()、不协调-5同源B受体()和Z-DNA结合蛋白1())在患者肝脏样本中的表达上调。然而,在ALF小鼠模型中,BNIP3L、RIPK3、磷酸化RIPK3(P-RIPK3)、UACA和裂解的半胱天冬酶-1的表达上调,而CASP1和UNC5B的表达下调。ZBP1和BMF的表达仅在ALF发展过程中增加,在终末期无显著变化。小鼠肝脏组织的免疫荧光显示巨噬细胞表达所有七种标志物。蛋白质印迹结果表明,细胞焦亡、凋亡和坏死性凋亡始终参与脂多糖(LPS)/d-半乳糖胺(d-gal)诱导的ALF小鼠。ALF细胞模型表明,骨髓来源的巨噬细胞(BMDM)在LPS刺激后形成PAN小体。

我们的结果表明,巨噬细胞的PAN细胞焦亡促进了ALF的发展。本研究中鉴定和验证的七个新的ALF生物标志物可能有助于进一步研究ALF的诊断标志物或新的治疗靶点。

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Pyroptosis-induced inflammation and tissue damage.细胞焦亡诱导的炎症与组织损伤。
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