文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

非AUG起始的N端延伸蛋白变体在癌症中的意义。

The implication of non-AUG-initiated N-terminally extended proteoforms in cancer.

作者信息

Pancsa Rita, Andreev Dmitry E, Dean Kellie

机构信息

Institute of Molecular Life Sciences, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.

Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia.

出版信息

RNA Biol. 2025 Dec;22(1):1-18. doi: 10.1080/15476286.2025.2498203. Epub 2025 Apr 29.


DOI:10.1080/15476286.2025.2498203
PMID:40276932
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12045569/
Abstract

Dysregulated translation is a hallmark of cancer, and recent genome-wide studies in tumour cells have uncovered widespread translation of non-canonical reading frames that often initiate at non-AUG codons. If an upstream non-canonical start site is located within a frame with an annotated coding sequence (CDS), such translation events can lead to the production of proteoforms with altered N-termini (PANTs). Certain examples of PANTs from oncogenes (e.g. c-MYC) and tumour suppressors (e.g. PTEN) have been previously linked to cancer. We have performed a systematic computational analysis on recently identified non-AUG initiation-derived N-terminal extensions of cancer-associated proteins, and we discuss how these extended proteoforms may acquire new oncogenic properties. We identified a loss of stability for the N-terminally extended proteoforms of oncogenes TCF-4 and SOX2. Furthermore, we discovered likely functional short linear motifs within the N-terminal extensions of oncogenes and tumour suppressors (SOX2, SUFU, SFPQ, TOP1 and SPEN/SHARP) that could provide an explanation for previously described functionalities or interactions of the proteins. In all, we identify novel cases where PANTs likely show different localization, functions, partner binding or turnover rates compared to the annotated proteoforms. Therefore, we propose that alterations in the stringency of translation initiation, often seen under conditions of cellular stress, may result in reprogramming of translation to generate novel PANTs that influence cancer progression.

摘要

翻译失调是癌症的一个标志,最近对肿瘤细胞进行的全基因组研究发现,非规范阅读框存在广泛翻译,这些阅读框通常从非AUG密码子起始。如果上游非规范起始位点位于带有注释编码序列(CDS)的阅读框内,此类翻译事件可导致产生N端改变的蛋白质变体(PANTs)。先前已将来自癌基因(如c-MYC)和肿瘤抑制因子(如PTEN)的某些PANTs实例与癌症联系起来。我们对最近鉴定出的癌症相关蛋白的非AUG起始衍生N端延伸进行了系统的计算分析,并讨论了这些延伸的蛋白质变体如何获得新的致癌特性。我们发现癌基因TCF-4和SOX2的N端延伸蛋白质变体稳定性降低。此外,我们在癌基因和肿瘤抑制因子(SOX2、SUFU、SFPQ、TOP1和SPEN/SHARP)的N端延伸内发现了可能具有功能的短线性基序,这可以解释这些蛋白质先前描述的功能或相互作用。总之,我们确定了一些新的情况,其中PANTs与注释的蛋白质变体相比可能表现出不同的定位、功能、伴侣结合或周转速率。因此,我们提出,在细胞应激条件下经常出现的翻译起始严格性改变,可能导致翻译重编程,以产生影响癌症进展的新型PANTs。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/918a028ed60c/KRNB_A_2498203_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/99aa52197bf4/KRNB_A_2498203_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/4642e958f45b/KRNB_A_2498203_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/98af98949b13/KRNB_A_2498203_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/d9efec7f62b8/KRNB_A_2498203_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/09e45d189abf/KRNB_A_2498203_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/918a028ed60c/KRNB_A_2498203_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/99aa52197bf4/KRNB_A_2498203_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/4642e958f45b/KRNB_A_2498203_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/98af98949b13/KRNB_A_2498203_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/d9efec7f62b8/KRNB_A_2498203_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/09e45d189abf/KRNB_A_2498203_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f800/12045569/918a028ed60c/KRNB_A_2498203_F0006_OC.jpg

相似文献

[1]
The implication of non-AUG-initiated N-terminally extended proteoforms in cancer.

RNA Biol. 2025-12

[2]
Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity.

mBio. 2017-6-27

[3]
Short internal open reading frames repress the translation of N-terminally truncated proteoforms.

EMBO Rep. 2025-3

[4]
Systematic analysis of the PTEN 5' leader identifies a major AUU initiated proteoform.

Open Biol. 2016-5

[5]
Alternative Translation Initiation of a Haloarchaeal Serine Protease Transcript Containing Two In-Frame Start Codons.

J Bacteriol. 2016-6-13

[6]
Complete motif analysis of sequence requirements for translation initiation at non-AUG start codons.

Nucleic Acids Res. 2018-1-25

[7]
eIF1 discriminates against suboptimal initiation sites to prevent excessive uORF translation genome-wide.

RNA. 2020-1-8

[8]
Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels.

Plant Mol Biol. 2023-1

[9]
Translation initiation at AUG and non-AUG triplets in plants.

Plant Sci. 2023-10

[10]
Proteins à la carte: riboproteogenomic exploration of bacterial N-terminal proteoform expression.

mBio. 2024-4-10

本文引用的文献

[1]
Nuclear release of eIF1 restricts start-codon selection during mitosis.

Nature. 2024-11

[2]
Nuclear and cytosolic fractions of SOX2 synergize as transcriptional and translational co-regulators of cell fate.

Cell Rep. 2024-10-22

[3]
Upstream open reading frames: new players in the landscape of cancer gene regulation.

NAR Cancer. 2024-5-20

[4]
The NTE domain of PTENα/β promotes cancer progression by interacting with WDR5 via its SSSRRSS motif.

Cell Death Dis. 2024-5-14

[5]
Accurate structure prediction of biomolecular interactions with AlphaFold 3.

Nature. 2024-6

[6]
DEGRONOPEDIA: a web server for proteome-wide inspection of degrons.

Nucleic Acids Res. 2024-7-5

[7]
Role of RNA binding proteins of the behavior and human splicing (DBHS) family in health and cancer.

RNA Biol. 2024-1

[8]
Multidimensional Separations in Top-Down Proteomics.

Anal Sci Adv. 2023-7

[9]
Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals.

Nat Commun. 2024-1-3

[10]
Loss-of-function cancer-linked mutations in the EIF4G2 non-canonical translation initiation factor.

Life Sci Alliance. 2024-3

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索