Pancsa Rita, Andreev Dmitry E, Dean Kellie
Institute of Molecular Life Sciences, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia.
RNA Biol. 2025 Dec;22(1):1-18. doi: 10.1080/15476286.2025.2498203. Epub 2025 Apr 29.
Dysregulated translation is a hallmark of cancer, and recent genome-wide studies in tumour cells have uncovered widespread translation of non-canonical reading frames that often initiate at non-AUG codons. If an upstream non-canonical start site is located within a frame with an annotated coding sequence (CDS), such translation events can lead to the production of proteoforms with altered N-termini (PANTs). Certain examples of PANTs from oncogenes (e.g. c-MYC) and tumour suppressors (e.g. PTEN) have been previously linked to cancer. We have performed a systematic computational analysis on recently identified non-AUG initiation-derived N-terminal extensions of cancer-associated proteins, and we discuss how these extended proteoforms may acquire new oncogenic properties. We identified a loss of stability for the N-terminally extended proteoforms of oncogenes TCF-4 and SOX2. Furthermore, we discovered likely functional short linear motifs within the N-terminal extensions of oncogenes and tumour suppressors (SOX2, SUFU, SFPQ, TOP1 and SPEN/SHARP) that could provide an explanation for previously described functionalities or interactions of the proteins. In all, we identify novel cases where PANTs likely show different localization, functions, partner binding or turnover rates compared to the annotated proteoforms. Therefore, we propose that alterations in the stringency of translation initiation, often seen under conditions of cellular stress, may result in reprogramming of translation to generate novel PANTs that influence cancer progression.
翻译失调是癌症的一个标志,最近对肿瘤细胞进行的全基因组研究发现,非规范阅读框存在广泛翻译,这些阅读框通常从非AUG密码子起始。如果上游非规范起始位点位于带有注释编码序列(CDS)的阅读框内,此类翻译事件可导致产生N端改变的蛋白质变体(PANTs)。先前已将来自癌基因(如c-MYC)和肿瘤抑制因子(如PTEN)的某些PANTs实例与癌症联系起来。我们对最近鉴定出的癌症相关蛋白的非AUG起始衍生N端延伸进行了系统的计算分析,并讨论了这些延伸的蛋白质变体如何获得新的致癌特性。我们发现癌基因TCF-4和SOX2的N端延伸蛋白质变体稳定性降低。此外,我们在癌基因和肿瘤抑制因子(SOX2、SUFU、SFPQ、TOP1和SPEN/SHARP)的N端延伸内发现了可能具有功能的短线性基序,这可以解释这些蛋白质先前描述的功能或相互作用。总之,我们确定了一些新的情况,其中PANTs与注释的蛋白质变体相比可能表现出不同的定位、功能、伴侣结合或周转速率。因此,我们提出,在细胞应激条件下经常出现的翻译起始严格性改变,可能导致翻译重编程,以产生影响癌症进展的新型PANTs。
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