文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

Utilizing bioinformatics to identify biomarkers and analyze their expression in relation to immune cell ratios in femoral head necrosis.

作者信息

Li Dongchen, Huang Zhilong, Ma Teng, Su Yu, Li Zhao, Sun Liang, Li Ming, Li Zhong, Li Yao, Wang Qian, Lu Yao

机构信息

Honghui Hospital, Xi'an Jiaotong University, Xi'an, China.

School of Medicine, Yan'an University, Yan'an, China.

出版信息

Front Physiol. 2025 Apr 16;16:1373721. doi: 10.3389/fphys.2025.1373721. eCollection 2025.


DOI:10.3389/fphys.2025.1373721
PMID:40308566
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12040900/
Abstract

BACKGROUND: Necrosis of the Femoral Head (NFH) represents a challenging orthopedic condition, characterized by elusive early detection and rapid progression, predominantly in the middle-aged demographic. Current research on the pathophysiological and immunoregulatory mechanisms underpinning immune cell infiltration in NFH is sparse. This study employs bioinformatics analysis of publicly available RNA sequencing databases to elucidate the pivotal molecules and pathways implicated in NFH progression. METHODS: The NFH-related dataset GSE123568 was obtained from the Gene Expression Omnibus (GEO). Subsequently, CIBERSORT was utilized to assess the proportion and distribution of immune cell types, followed by the identification of critical Hub immune cells using LASSO and RFE algorithms. The dataset GSE123568 was then explored to identify significantly differentially expressed genes (DEGs). These genes were further refined by intersecting with death-associated genes reported in existing literature. GO and KEGG pathway enrichment analyses were conducted to elucidate their underlying molecular mechanism. A protein-protein interaction (PPI) network was constructed using the STRING database and visualized via Cytoscape. Hub genes were identified using the CytoHubba plugin, followed by enrichment analysis, and their expression levels were evaluated using the ROC curve. In addition, we performed expression data visualization and ROC curve analysis on the external dataset GSE74089 to further evaluate the discriminative power of the hub genes. Moreover, the study analyzed the correlation between the identified hub genes and Hub immune cells. Finally, we verified the hub genes utilizing real-time fluorescence quantitative polymerase chain reaction (RT-qPCR) and immunohistochemistry. RESULTS: Four types of immune cells (Neutrophil, Mast cell resting, Myeloid dendritic cell activated, Macrophage M0) were identified. Fourteen pivotal genes (BCL2L1, BIRC2, NFKBIA, XIAP, CFLAR, AKT1, BIRC3, IKBKB, RIPK1, CASP8, TNFRSF1A, IL1B, CASP1, STAT3) were identified, and the findings were validated using the external dataset GSE74089. Among these, STAT3 exhibited the most pronounced positive correlation with neutrophils (r = 0.6804, p = 3.525e-05). Conversely, XIAP displayed the most significant negative correlation with Myeloid dendritic cell activated (r = -0.3610, p = 0.04003). In experiments, the experimental outcomes for five hub genes (CASP8, TNFRSF1A, AKT1, XIAP and STAT3) were congruent with the results obtained from bioinformatics analysis. CONCLUSION: Our study identified CASP8, TNFRSF1A, AKT1, XIAP, STAT3 and BCL2L1 as potential biomarkers for NFH patients and elucidated the immune cell types with the strongest association to these markers. These insights may be crucial for the early diagnosis, understanding of the pathophysiological mechanisms, and the development of treatment strategies for NFH.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/04313258d93a/fphys-16-1373721-g015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/66572b1fb911/fphys-16-1373721-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/66f287b90076/fphys-16-1373721-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/5864c58f31b5/fphys-16-1373721-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/e364c6e53553/fphys-16-1373721-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/4da50bc5752c/fphys-16-1373721-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/092670ec76d4/fphys-16-1373721-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/f1ff2ad46caa/fphys-16-1373721-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/be5da47c69a1/fphys-16-1373721-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/d02ba33862b9/fphys-16-1373721-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/c10d86cbef5f/fphys-16-1373721-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/cdba48137be9/fphys-16-1373721-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/8ce639dbc368/fphys-16-1373721-g012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/c64fb73a7505/fphys-16-1373721-g013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/7b8076c0eddf/fphys-16-1373721-g014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/04313258d93a/fphys-16-1373721-g015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/66572b1fb911/fphys-16-1373721-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/66f287b90076/fphys-16-1373721-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/5864c58f31b5/fphys-16-1373721-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/e364c6e53553/fphys-16-1373721-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/4da50bc5752c/fphys-16-1373721-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/092670ec76d4/fphys-16-1373721-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/f1ff2ad46caa/fphys-16-1373721-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/be5da47c69a1/fphys-16-1373721-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/d02ba33862b9/fphys-16-1373721-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/c10d86cbef5f/fphys-16-1373721-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/cdba48137be9/fphys-16-1373721-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/8ce639dbc368/fphys-16-1373721-g012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/c64fb73a7505/fphys-16-1373721-g013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/7b8076c0eddf/fphys-16-1373721-g014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2f/12040900/04313258d93a/fphys-16-1373721-g015.jpg

相似文献

[1]
Utilizing bioinformatics to identify biomarkers and analyze their expression in relation to immune cell ratios in femoral head necrosis.

Front Physiol. 2025-4-16

[2]
Identification of potential autophagy-related genes in steroid-induced osteonecrosis of the femoral head via bioinformatics analysis and experimental verification.

J Orthop Surg Res. 2022-2-12

[3]
Identification and analysis of mitochondria-related central genes in steroid-induced osteonecrosis of the femoral head, along with drug prediction.

Front Endocrinol (Lausanne). 2024

[4]
Identification and validation of endoplasmic reticulum stress-related genes in patients with steroid-induced osteonecrosis of the femoral head.

Sci Rep. 2024-9-16

[5]
Bioinformatics analysis of effective biomarkers and immune infiltration in type 2 diabetes with cognitive impairment and aging.

Sci Rep. 2024-10-7

[6]
Integrated bioinformatics analysis and experimental validation of exosome-related gene signature in steroid-induced osteonecrosis of the femoral head.

J Orthop Surg Res. 2025-1-9

[7]
Bioinformatics proved the existence of potential hub genes activating autophagy to participate in cartilage degeneration in osteonecrosis of the femoral head.

J Mol Histol. 2024-8

[8]
Immune-related gene characterization and biological mechanisms in major depressive disorder revealed based on transcriptomics and network pharmacology.

Front Psychiatry. 2024-12-6

[9]
Comprehensive transcriptomic analysis of immune-related genes in diabetic foot ulcers: New insights into mechanisms and therapeutic targets.

Int Immunopharmacol. 2024-9-30

[10]
Six potential biomarkers in septic shock: a deep bioinformatics and prospective observational study.

Front Immunol. 2023

本文引用的文献

[1]
Peripheral blood mononuclear cells expression of miR-200c, miR-125b, miR-27b, miR-203, and miR-155 in patients with significant or insignificant coronary artery stenosis.

Sci Rep. 2023-10-27

[2]
Selective activation of STAT3 and STAT5 dictates the fate of myeloid progenitor cells.

Cell Death Discov. 2023-7-28

[3]
Early depletion of M1 macrophages retards the progression of glucocorticoid-associated osteonecrosis of the femoral head.

Int Immunopharmacol. 2023-9

[4]
Overexpression of the X-Linked Inhibitor of Apoptosis Protein (XIAP) in Neurons Improves Cell Survival and the Functional Outcome after Traumatic Spinal Cord Injury.

Int J Mol Sci. 2023-2-1

[5]
Identification and validation of a prognostic signature of autophagy, apoptosis and pyroptosis-related genes for head and neck squamous cell carcinoma: to imply therapeutic choices of HPV negative patients.

Front Immunol. 2022

[6]
[Research progress of immune cells regulating the occurrence and development of osteonecrosis of the femoral head].

Zhongguo Xiu Fu Chong Jian Wai Ke Za Zhi. 2022-11-15

[7]
[Expert consensus on clinical diagnosis and treatment technique of osteonecrosis of the femoral head (2022 version)].

Zhongguo Xiu Fu Chong Jian Wai Ke Za Zhi. 2022-11-15

[8]
Steroid-induced osteonecrosis.

J Transl Autoimmun. 2022-9-30

[9]
Avascular Necrosis of Femoral Head-Overview and Current State of the Art.

Int J Environ Res Public Health. 2022-6-15

[10]
Osteonecrosis of the Femoral Head.

J Am Acad Orthop Surg Glob Res Rev. 2022-5-1

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索