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StructMAn 2.0网络版:一个用于蛋白质序列和突变结构注释的网络服务器。

StructMAn 2.0 Web: a web server for structural annotation of protein sequences and mutations.

作者信息

Yurtseven Alper, Keller Sebastian, Hirsch Pascal, Kalinina Olga V, Gress Alexander

机构信息

Research Group Drug Bioinformatics, Department Drug Bioinformatics, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Campus E8.1, 66123 Saarbrücken, Saarland, Germany.

Graduate School of Computer Science, Saarland University, 66123 Saarbrücken, Saarland, Germany.

出版信息

Nucleic Acids Res. 2025 Jul 7;53(W1):W528-W533. doi: 10.1093/nar/gkaf381.

Abstract

StructMAn is a method for protein structural annotation. It describes each position of a protein sequence or specific variants in it in terms of their importance for the three-dimensional (3D) structure of the protein and its interactions with other molecules. StructMAn maps, aligns, and aggregates data from experimentally resolved and predicted 3D structures of proteins and their homologs for any given protein sequence and/or a combination of mutations in it. The results provide structural annotation for every amino acid position allowing a detailed structural analysis. Furthermore, StructMAn enables generation of a wide variety of position-specific high-quality structural features that can be leveraged in machine learning applications. With the new web server StructMAn 2.0 Web, we provide a user-friendly way to use StructMAn offering an easy-to-use input interface and a comprehensive visualization for the various results of StructMAn. StructMAn 2.0 Web is available at https://tools.helmholtz-hips.de/structman.

摘要

StructMAn是一种蛋白质结构注释方法。它根据蛋白质序列中每个位置或特定变体对蛋白质三维(3D)结构及其与其他分子相互作用的重要性来描述它们。StructMAn针对任何给定的蛋白质序列和/或其中的突变组合,对来自蛋白质及其同源物的实验解析和预测3D结构的数据进行映射、比对和汇总。结果为每个氨基酸位置提供结构注释,以便进行详细的结构分析。此外,StructMAn能够生成各种特定位置的高质量结构特征,可用于机器学习应用。通过新的网络服务器StructMAn 2.0 Web,我们提供了一种用户友好的方式来使用StructMAn,提供易于使用的输入界面和对StructMAn各种结果的全面可视化。可通过https://tools.helmholtz-hips.de/structman访问StructMAn 2.0 Web。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/77d6/12230719/e8de28585dc7/gkaf381figgra1.jpg

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