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转座元件作为正常和恶性造血过程中的基因组调节因子。

Transposable elements as genome regulators in normal and malignant haematopoiesis.

作者信息

Prokopov Dmitry, Tunbak Hale, Leddy Eve, Drylie Bryce, Camera Francesco, Deniz Özgen

机构信息

Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London, London, UK.

QMUL Centre for Epigenetics, Queen Mary University of London, London, UK.

出版信息

Blood Cancer J. 2025 May 6;15(1):87. doi: 10.1038/s41408-025-01295-9.

DOI:10.1038/s41408-025-01295-9
PMID:40328728
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12056191/
Abstract

Transposable elements (TEs) constitute over half of the human genome and have played a profound role in genome evolution. While most TEs have lost the ability to transpose, many retain functional elements that serve as drivers of genome innovation, including the emergence of novel genes and regulatory elements. Recent advances in experimental and bioinformatic methods have provided new insights into their roles in human biology, both in health and disease. In this review, we discuss the multifaceted roles of TEs in haematopoiesis, highlighting their contributions to both normal and pathological contexts. TEs influence gene regulation by reshaping gene-regulatory networks, modulating transcriptional activity, and creating novel regulatory elements. These activities play key roles in maintaining normal haematopoietic processes and supporting cellular regeneration. However, in haematological malignancies, TE reactivation can disrupt genomic integrity, induce structural variations, and dysregulate transcriptional programmes, thereby driving oncogenesis. By examining the impact of TE activity on genome regulation and variation, we highlight their pivotal roles in both normal haematopoietic processes and haematological cancers.

摘要

转座元件(TEs)构成了人类基因组的一半以上,并在基因组进化中发挥了深远作用。虽然大多数转座元件已失去转座能力,但许多仍保留着作为基因组创新驱动力的功能元件,包括新基因和调控元件的出现。实验和生物信息学方法的最新进展为它们在人类生物学(包括健康和疾病)中的作用提供了新的见解。在本综述中,我们讨论了转座元件在造血过程中的多方面作用,强调了它们在正常和病理情况下的贡献。转座元件通过重塑基因调控网络、调节转录活性和创造新的调控元件来影响基因调控。这些活动在维持正常造血过程和支持细胞再生中起关键作用。然而,在血液系统恶性肿瘤中,转座元件的重新激活会破坏基因组完整性,诱导结构变异,并使转录程序失调,从而驱动肿瘤发生。通过研究转座元件活性对基因组调控和变异的影响,我们强调了它们在正常造血过程和血液系统癌症中的关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db57/12056191/67b50ade45a2/41408_2025_1295_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db57/12056191/89c2f6948088/41408_2025_1295_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db57/12056191/46439d316c25/41408_2025_1295_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db57/12056191/67b50ade45a2/41408_2025_1295_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db57/12056191/89c2f6948088/41408_2025_1295_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db57/12056191/46439d316c25/41408_2025_1295_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db57/12056191/67b50ade45a2/41408_2025_1295_Fig3_HTML.jpg

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本文引用的文献

1
Endogenous retroelements in hematological malignancies: From epigenetic dysregulation to therapeutic targeting.血液系统恶性肿瘤中的内源性逆转录元件:从表观遗传失调到治疗靶点
Am J Hematol. 2025 Jan;100(1):116-130. doi: 10.1002/ajh.27501. Epub 2024 Oct 10.
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scNanoSeq-CUT&Tag: a single-cell long-read CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells.scNanoSeq-CUT&Tag:一种单细胞长读长 CUT&Tag 测序方法,可在单个细胞内高效进行染色质修饰谱分析。
Nat Methods. 2024 Nov;21(11):2044-2057. doi: 10.1038/s41592-024-02453-w. Epub 2024 Oct 7.
3
Landscape of evolutionary arms races between transposable elements and KRAB-ZFP family.
转座元件与 KRAB-ZFP 家族间进化军备竞赛的全景图。
Sci Rep. 2024 Oct 7;14(1):23358. doi: 10.1038/s41598-024-73752-7.
4
RNA mC oxidation by TET2 regulates chromatin state and leukaemogenesis.TET2 通过调控 RNA mC 氧化修饰来调节染色质状态和白血病发生。
Nature. 2024 Oct;634(8035):986-994. doi: 10.1038/s41586-024-07969-x. Epub 2024 Oct 2.
5
IRescue: uncertainty-aware quantification of transposable elements expression at single cell level.IRescue:单细胞水平中转座元件表达的不确定性感知量化。
Nucleic Acids Res. 2024 Oct 28;52(19):e93. doi: 10.1093/nar/gkae793.
6
Regulatory transposable elements in the encyclopedia of DNA elements.调控转座元件在 DNA 元件百科全书。
Nat Commun. 2024 Aug 31;15(1):7594. doi: 10.1038/s41467-024-51921-6.
7
Accurate allocation of multimapped reads enables regulatory element analysis at repeats.准确分配多映射reads 可实现重复元件调控元件分析。
Genome Res. 2024 Jul 23;34(6):937-951. doi: 10.1101/gr.278638.123.
8
Systematic single-cell analysis reveals dynamic control of transposable element activity orchestrating the endothelial-to-hematopoietic transition.系统单细胞分析揭示了转座元件活性的动态控制,协调内皮细胞向造血细胞的转变。
BMC Biol. 2024 Jun 27;22(1):143. doi: 10.1186/s12915-024-01939-5.
9
Biological relevance of alternative splicing in hematologic malignancies.剪接变异在血液系统恶性肿瘤中的生物学相关性。
Mol Med. 2024 May 17;30(1):62. doi: 10.1186/s10020-024-00839-2.
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Nucleic Acids Res. 2024 Jun 24;52(11):6285-6297. doi: 10.1093/nar/gkae306.