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阵列组装器为CRISPR Cas12和Cas13变体提供了极大简化的crRNA阵列设计。

Array Assembler Provides Greatly Simplified crRNA Array Design for CRISPR Cas12 and Cas13 Variants.

作者信息

Bryson James W

机构信息

Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen 2200, Denmark.

出版信息

ACS Synth Biol. 2025 May 16;14(5):1868-1872. doi: 10.1021/acssynbio.5c00100. Epub 2025 May 7.

Abstract

As newer CRISPR variants have emerged and corresponding toolkits have been developed, researchers can now readily target multiple genes simultaneously for knockout, activation, or repression alongside being able to bind or cleave mRNA. However, as larger multitargeting crRNA arrays are required for these experiments, the design process becomes more complicated, taking more time and increasing risks of errors being introduced. The Array Assembler seeks to address the critical bottleneck that emerges during longer crRNA array design by providing a highly user-friendly tool to process input crRNA spacer sequences into the oligos required for efficient assembly of the corresponding crRNA array. By enabling rapid and reliable design of oligos for efficient assembly of crRNA arrays from a user-defined list of crRNA spacer sequences this tool should prove useful for a wide range of laboratories employing genomic perturbations.

摘要

随着更新的CRISPR变体出现以及相应的工具包得到开发,研究人员现在能够同时轻松地针对多个基因进行敲除、激活或抑制,同时还能够结合或切割信使核糖核酸(mRNA)。然而,由于这些实验需要更大的多靶点CRISPR核糖核酸(crRNA)阵列,设计过程变得更加复杂,耗时更长,引入错误的风险也增加了。阵列组装器旨在解决在较长的crRNA阵列设计过程中出现的关键瓶颈,通过提供一个高度用户友好的工具,将输入的crRNA间隔序列处理成有效组装相应crRNA阵列所需的寡核苷酸。通过能够从用户定义的crRNA间隔序列列表中快速可靠地设计用于有效组装crRNA阵列的寡核苷酸,该工具对于广泛采用基因组扰动的实验室应该是有用的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5789/12090338/41342a6aea32/sb5c00100_0001.jpg

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