Qazi Sanjive, Potts Michael, Myers Scott, Richardson Stephen, Trieu Vuong
Oncotelic Therapeutics, 29397 Agoura Road, Suite 107, Agoura Hills, CA 91301, USA.
Westmorland Campus, Kendal College, Market Place, Kendal, Cumbria LA9 4TN, UK.
Cancers (Basel). 2025 Mar 27;17(7):1122. doi: 10.3390/cancers17071122.
(1) Background: Glioblastoma (GBM) is the most aggressive and common primary malignant brain tumor in adults, constituting 45.6% of tumors. We explored the impact of gene methylation of the O-6-Methylguanine-DNA Methyltransferase () and the Transforming Growth Factor Beta ( gene complex using the TCGA dataset for GBM patients. (2) Methods: We implemented a multivariate Cox proportional hazards model to directly compare hazard ratios for and methylation in relation to OS, considering male versus female, age at diagnosis, and age interactions with gene methylation and sex variables. Reactome analysis was performed to identify enriched pathways negatively correlated with methylation. (3) Results: The GBM patients had high levels of gene methylation; this primarily benefited the young adult male patients, and multivariate analysis exhibited a significantly improved OS prognosis HR (95% CI range) = 0.04 (0.006-0.274); = 0.001) relative to the (HR (95% CI range) = 0.657 (0.454-0.951); = 0.026) and (HR (95% CI range) = 0.667 (0.475-0.936); = 0.019) groups of GBM patients. The Reactome pathways collectively represented T-cell activation, differentiation, effector functions, antigen presentation, and Toll-like receptor pathways. Gene level mRNA expression highlighted four positive prognostic genes upregulated in tumor tissues, and their expression was validated in independent single-cell RNA-seq experiments. These genes were highly expressed in macrophages (HIF1A, TRIM22, IRAK4, PARP9). In contrast, MALT1 mRNA expression was the only gene product with a negative prognostic impact on OS in GBM patients (HR (95% CI range) = 1.997 (1.1-3.625); = 0.023). (4) Conclusions: Increased levels gene methylation predict improved OS, especially in young adult male GBM patients, above that of gene methylation, and should be considered during the administration of mRNA-based TGFB2 therapies.
(1) 背景:胶质母细胞瘤(GBM)是成人中最具侵袭性且最常见的原发性恶性脑肿瘤,占肿瘤的45.6%。我们使用GBM患者的TCGA数据集探讨了O-6-甲基鸟嘌呤-DNA甲基转移酶()和转化生长因子β(基因复合体的基因甲基化的影响。(2) 方法:我们实施了多变量Cox比例风险模型,以直接比较与OS相关的和甲基化的风险比,同时考虑男性与女性、诊断时的年龄以及年龄与基因甲基化和性别变量的相互作用。进行Reactome分析以识别与甲基化呈负相关的富集途径。(3) 结果:GBM患者具有高水平的基因甲基化;这主要使年轻成年男性患者受益,多变量分析显示相对于(风险比(95%置信区间范围)=0.657(0.454 - 0.951);=0.026)和(风险比(95%置信区间范围)=0.667(0.475 - 0.936);=0.019)组的GBM患者,其OS预后风险比(95%置信区间范围)=0.04(0.006 - 0.274);=0.001)显著改善。Reactome途径共同代表T细胞活化、分化、效应功能、抗原呈递和Toll样受体途径。基因水平的mRNA表达突出了肿瘤组织中上调的四个阳性预后基因,并且它们的表达在独立的单细胞RNA测序实验中得到了验证。这些基因在巨噬细胞中高度表达(HIF1A、TRIM22、IRAK4、PARP9)。相比之下,MALT1 mRNA表达是对GBM患者OS具有负面预后影响的唯一基因产物(风险比(95%置信区间范围)=1.997(1.1 - 3.625);=0.023)。(4) 结论:基因甲基化水平升高预示着OS改善,尤其是在年轻成年男性GBM患者中,优于基因甲基化,并且在基于mRNA的TGFB2治疗给药期间应予以考虑。