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使用生物信息学方法鉴定与阿尔茨海默病中囊泡运输相关的新型生物标志物。

Identification of Novel Biomarkers Related to Vesicle Trafficking in Alzheimer's Disease Using Bioinformatics Approaches.

作者信息

Hu Yirong, Liu Yi, Zhu Qiuyan, Chen Yong, Zeng Ying

机构信息

Department of Neurology, Yichun People's Hospital, No. 1061 Jinxiu Avenue, Yiyang New District, Yichun, Jiangxi, 336000, China.

Cardiothoracic surgery, Yichun People's Hospital, Yichun, Jiangxi, 336000, China.

出版信息

Neurochem Res. 2025 May 8;50(3):157. doi: 10.1007/s11064-025-04410-1.

Abstract

Alzheimer's disease (AD) is a neurodegenerative disorder with complex pathogenesis. Vesicle trafficking abnormalities are closely associated with AD, making the identification of related biomarkers crucial. Chip data of AD were downloaded from the GEO database as training and test sets. Differentially expressed vesicle trafficking-related genes were analyzed, followed by construction of protein-protein interaction (PPI) networks, machine learning for important biomarkers identification, and various analyses including ROC curve analysis, and construction of regulatory networks. A total of 149 differentially expressed vesicle trafficking-related genes were identified. Through multiple analyses, 5 key genes (KIF22, ACTR10, TUBB2A, TUBA3C, and DCTN1) were obtained. Additionally, potential miRNA regulatory networks and candidate drugs were predicted, and AD subtypes were characterized.This study successfully identified novel biomarkers related to vesicle trafficking in AD, and these findings provide new insights into the role of intracellular transport dysfunction in AD pathogenesis.

摘要

阿尔茨海默病(AD)是一种发病机制复杂的神经退行性疾病。囊泡运输异常与AD密切相关,因此识别相关生物标志物至关重要。从GEO数据库下载AD芯片数据作为训练集和测试集。分析差异表达的囊泡运输相关基因,随后构建蛋白质-蛋白质相互作用(PPI)网络,通过机器学习识别重要生物标志物,并进行包括ROC曲线分析和调控网络构建在内的各种分析。共鉴定出149个差异表达的囊泡运输相关基因。通过多次分析,获得了5个关键基因(KIF22、ACTR10、TUBB2A、TUBA3C和DCTN1)。此外,预测了潜在的miRNA调控网络和候选药物,并对AD亚型进行了特征描述。本研究成功识别出与AD中囊泡运输相关的新型生物标志物,这些发现为细胞内运输功能障碍在AD发病机制中的作用提供了新的见解。

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