Yang Yuze, Chen Yumei, Hu Lirong, Zhang Congcong, Chen Gong, Hou Lingling, Xu Qing, Wang Yachun, Li Min
College of Life Sciences and Bioengineering, Beijing Jiaotong University, Beijing, 100044, China.
College of Life Science and Technology, Inner Mongolia Normal University, Huhhot, 010022, China.
BMC Genomics. 2025 May 9;26(1):464. doi: 10.1186/s12864-025-11683-x.
Heat stress seriously affects the production and health of dairy cows and is a key factor limiting the sustainable development of the dairy industry. DNA methylation serves as an important epigenetic regulatory mechanism closely associated with an animal's response to heat stress. However, the specific molecular mechanism of DNA methylation in cows' heat stress response is not fully understood.
In this study, whole genome bisulfite sequencing analysis of blood identified 49861 specific differentially methylated regions corresponding to 7613 differentially methylated genes between spring and summer dairy cows. Among them, 4069 the promoter region of differentially methylated genes were significantly enriched in key biological pathways such as substance transport, reactive oxygen species metabolism, signal transduction, and energy metabolism. By integrating the expression data of 4069 promoter differentially methylated genes, 157 genes were further screened, and their DNA methylation levels were negatively correlated with gene expression. The changes in DNLZ, GNAS, and SMAD5 genes were most significant, and network analysis showed that DNLZ gene has high connectivity in the protein-protein interaction network, indicating its potential key function in heat stress response. Experimental verification shows that under heat stress conditions, the methylation level of CpG islands in the promoter region of DNLZ gene significantly increases, and its methylation level is significantly negatively correlated with gene expression level. The Dual-luciferase reporter assays using constructs containing the DNLZ promoter reporter gene experiment further confirms that promoter methylation significantly inhibits DNLZ transcriptional activity, and the higher the degree of methylation, the stronger the inhibitory effect.
The research results provide new insights into the mechanism of heat stress-related DNA methylation in dairy cows, clarify the key roles of genes such as DNLZ, and provide potential target genes and epigenetic markers for the cultivation of heat-resistant dairy cows.
热应激严重影响奶牛的生产性能和健康,是限制奶牛业可持续发展的关键因素。DNA甲基化作为一种重要的表观遗传调控机制,与动物对热应激的反应密切相关。然而,奶牛热应激反应中DNA甲基化的具体分子机制尚不完全清楚。
本研究通过对血液进行全基因组亚硫酸氢盐测序分析,鉴定出春夏季奶牛之间49861个特定的差异甲基化区域,对应7613个差异甲基化基因。其中,4069个差异甲基化基因的启动子区域在物质运输、活性氧代谢、信号转导和能量代谢等关键生物学途径中显著富集。通过整合4069个启动子差异甲基化基因的表达数据,进一步筛选出157个基因,其DNA甲基化水平与基因表达呈负相关。DNLZ、GNAS和SMAD5基因的变化最为显著,网络分析表明DNLZ基因在蛋白质-蛋白质相互作用网络中具有较高的连通性,表明其在热应激反应中可能具有关键作用。实验验证表明,在热应激条件下,DNLZ基因启动子区域CpG岛的甲基化水平显著升高,且其甲基化水平与基因表达水平显著负相关。使用含有DNLZ启动子报告基因的构建体进行双荧光素酶报告基因实验进一步证实,启动子甲基化显著抑制DNLZ的转录活性,甲基化程度越高,抑制作用越强。
研究结果为奶牛热应激相关DNA甲基化机制提供了新的见解,阐明了DNLZ等基因的关键作用,为耐热奶牛的培育提供了潜在的靶基因和表观遗传标记。