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甲状腺乳头状癌的表观基因组分析揭示了具有临床意义的不同亚型。

Epigenomic profiling of papillary thyroid carcinoma reveals distinct subtypes with clinical implications.

作者信息

Lee Yeongun, Park Hyo Jin, Lee Jin Seok, Jeong Ho Jung, Kim Su Min, Cho Minjeong, Woo Wonjin, Dho So Hee, Kim Seok-Mo, Kim Lark Kyun

机构信息

Department of Biomedical Sciences, Graduate School of Medical Science, Brain Korea 21 Project, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul, Republic of Korea.

Department of Surgery, Thyroid Cancer Center, Gangnam Severance Hospital, Institute of Refractory Thyroid Cancer, Yonsei University College of Medicine, Seoul, Republic of Korea.

出版信息

NPJ Precis Oncol. 2025 May 10;9(1):136. doi: 10.1038/s41698-025-00932-7.

DOI:10.1038/s41698-025-00932-7
PMID:40348904
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12065858/
Abstract

Papillary thyroid carcinoma (PTC) is the most prevalent form of thyroid cancer with generally favorable outcomes. However, surgeons often face challenges regarding optimal surgical timing, extent of surgery, and identifying patients at risk for metastasis or progression to more aggressive subtypes. The ongoing debate over immediate surgery versus active surveillance emphasizes the need for reliable, minimally invasive diagnostic tools to inform surgical decision-making. This study aims to develop an epigenetic biomarker-based prediction system using fine-needle aspiration biopsy (FNAB) samples to assess PTC aggressiveness preoperatively. We conducted a comprehensive analysis of methylome data to identify approximately 7200 CpG islands with altered methylation levels in thyroid cancer tissues. These candidate regions were further examined in our cohort of 55 PTC patients to develop methylation-specific primers suitable for FNAB samples. Methylation patterns allowed us to stratify patients into two distinct prognostic groups, one of which exhibited a poorer survival rate. Our methylation-specific primers effectively classified FNAB samples into these groups, demonstrating their potential as a preoperative tool for assessing tumor aggressiveness. This stratification aids in informing surgical planning and personalizing treatment strategies. DNA methylation profiling of PTC identifies key epigenetic biomarkers associated with tumor aggressiveness. Utilizing these biomarkers in FNAB samples provides a minimally invasive method for preoperative risk assessment, assisting surgeons in tailoring surgical interventions and potentially improving patient outcomes.

摘要

甲状腺乳头状癌(PTC)是最常见的甲状腺癌形式,总体预后良好。然而,外科医生在确定最佳手术时机、手术范围以及识别有转移风险或进展为更具侵袭性亚型的患者方面常常面临挑战。关于立即手术与积极监测的持续争论凸显了对可靠的、微创诊断工具的需求,以指导手术决策。本研究旨在开发一种基于表观遗传生物标志物的预测系统,使用细针穿刺活检(FNAB)样本术前评估PTC的侵袭性。我们对甲基化组数据进行了全面分析,以识别甲状腺癌组织中甲基化水平改变的约7200个CpG岛。在我们的55例PTC患者队列中进一步检查这些候选区域,以开发适用于FNAB样本的甲基化特异性引物。甲基化模式使我们能够将患者分为两个不同的预后组,其中一组生存率较差。我们的甲基化特异性引物有效地将FNAB样本分为这些组,证明了它们作为术前评估肿瘤侵袭性工具的潜力。这种分层有助于指导手术规划和个性化治疗策略。PTC的DNA甲基化谱分析确定了与肿瘤侵袭性相关的关键表观遗传生物标志物。在FNAB样本中利用这些生物标志物提供了一种微创的术前风险评估方法,帮助外科医生调整手术干预措施,并可能改善患者预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/f5fc673b32d8/41698_2025_932_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/fd35adb326f6/41698_2025_932_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/ce3a78de359d/41698_2025_932_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/fddcf2f3ea64/41698_2025_932_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/1781cc332bce/41698_2025_932_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/2017594759d8/41698_2025_932_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/f5fc673b32d8/41698_2025_932_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/fd35adb326f6/41698_2025_932_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/ce3a78de359d/41698_2025_932_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/fddcf2f3ea64/41698_2025_932_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/1781cc332bce/41698_2025_932_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/2017594759d8/41698_2025_932_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/951c/12065858/f5fc673b32d8/41698_2025_932_Fig6_HTML.jpg

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本文引用的文献

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Cancer Cell. 2023 Oct 9;41(10):1749-1762.e6. doi: 10.1016/j.ccell.2023.08.010. Epub 2023 Sep 7.
2
Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal.在 cBioPortal 中分析和可视化 AACR 项目 GENIE 生物制药协作的纵向基因组和临床数据。
Cancer Res. 2023 Dec 1;83(23):3861-3867. doi: 10.1158/0008-5472.CAN-23-0816.
3
Chromatin accessibility profiling by ATAC-seq.
染色质可及性分析的 ATAC-seq 技术。
Nat Protoc. 2022 Jun;17(6):1518-1552. doi: 10.1038/s41596-022-00692-9. Epub 2022 Apr 27.
4
Liquid biopsy: a step closer to transform diagnosis, prognosis and future of cancer treatments.液体活检:癌症诊疗的变革更近一步。
Mol Cancer. 2022 Mar 18;21(1):79. doi: 10.1186/s12943-022-01543-7.
5
Hypermethylation of PDX1, EN2, and MSX1 predicts the prognosis of colorectal cancer.PDX1、EN2和MSX1的高甲基化可预测结直肠癌的预后。
Exp Mol Med. 2022 Feb;54(2):156-168. doi: 10.1038/s12276-022-00731-1. Epub 2022 Feb 15.
6
The Role of DNA Methylation in Genome Defense in Cnidaria and Other Invertebrates.DNA 甲基化在刺胞动物和其他无脊椎动物基因组防御中的作用。
Mol Biol Evol. 2022 Feb 3;39(2). doi: 10.1093/molbev/msac018.
7
Repression of germline genes by PRC1.6 and SETDB1 in the early embryo precedes DNA methylation-mediated silencing.PRC1.6 和 SETDB1 在早期胚胎中对种系基因的抑制先于 DNA 甲基化介导的沉默。
Nat Commun. 2021 Dec 2;12(1):7020. doi: 10.1038/s41467-021-27345-x.
8
Chromatin accessibility associates with protein-RNA correlation in human cancer.染色质可及性与人癌症中的蛋白 RNA 相关性相关。
Nat Commun. 2021 Sep 30;12(1):5732. doi: 10.1038/s41467-021-25872-1.
9
Clinical validation of a targeted methylation-based multi-cancer early detection test using an independent validation set.使用独立验证集对靶向甲基化的多癌种早期检测测试进行临床验证。
Ann Oncol. 2021 Sep;32(9):1167-1177. doi: 10.1016/j.annonc.2021.05.806. Epub 2021 Jun 24.
10
gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler.gprofiler2——一个用于基因列表功能富集分析的 R 包和基因本体论(GO)注释工具集 g: Profiler。
F1000Res. 2020 Jul 15;9. doi: 10.12688/f1000research.24956.2. eCollection 2020.