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解析来自体腔液的肽作为糖尿病肾病多靶点治疗的潜力:一项计算机模拟研究。

Unraveling the power of peptides from coelomic fluid as multitarget therapy of diabetic kidney disease: An in-silico study.

作者信息

Rita Rauza S, Cuandra Kevin N, Nasri Syahidatul A, Carmenita Mutiara A, Kristaningtyas Nathania A, Rasendriya Daffa Z, Maulana Rafi, Hibatullah Muhammad N, Yahono Angela S, Afdhal Fitrah, Ibrahim Filzatuz Z, Nayu Balqist K, Teguh Muhammad

机构信息

Department of Biochemistry, Faculty of Medicine, Universitas Andalas, Padang, Indonesia.

Department of Medicine, Faculty of Medicine, Universitas Andalas, Padang, Indonesia.

出版信息

Narra J. 2025 Apr;5(1):e1180. doi: 10.52225/narra.v5i1.1180. Epub 2025 Jan 3.

DOI:10.52225/narra.v5i1.1180
PMID:40352211
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12059842/
Abstract

Diabetic kidney disease is a condition characterized by persistent albuminuria, diabetic glomerular lesions, and a reduced glomerular filtration rate in people with diabetes. Peptides in coelomic fluid have been proven to provide antidiabetic and anti-inflammatory activity that can be used as one of the innovations in developing a multitarget therapy, especially in diabetic kidney disease. Therefore, the aim of this study was to unravel the power of peptide-based metabolites from coelomic fluid as multitarget therapy for diabetic kidney disease using an in-silico study. UCSF Chimera software was utilized to construct the three-dimensional structure of coelomic fluid peptides from The toxicity and allergenicity of peptides were examined using the ToxinPred and AllerTop websites, respectively. From the PDBJ database, the 3D structures of protein kinase B, alpha isoform (AKT1); vascular endothelial growth factor receptor 2 (VEGFR2); epidermal growth factor receptor (EGFR); α-glucosidase; and glucokinase were obtained. Molecular docking was carried out using MOE Software. In this in-silico study, peptide 9 (-10.32 kcal/mol), peptide 1 (-9.41 kcal/mol), and peptide 3 (-9-55 kcal/mol) were shown to act as specific adenosine triphosphate-competitive inhibitors of EGFR, AKT1, and VEGFR2, respectively. Peptide 8 (-11.06 kcal/mol) can specifically inhibit α-glucosidase by binding to its active site. Peptide 1 (-9.80 kcal/mol) is predicted to specifically inhibit glucokinase activity by blocking its active side. Molecular dynamics simulations confirmed stable interactions with receptor proteins. In conclusion, coelomic fluid peptides have been shown not only to alleviate diabetic kidney disease but also to stabilize blood glucose levels and prevent hyperglycemia based on in-silico analysis.

摘要

糖尿病肾病是一种以糖尿病患者持续性蛋白尿、糖尿病性肾小球病变和肾小球滤过率降低为特征的病症。已证实体腔液中的肽具有抗糖尿病和抗炎活性,可作为开发多靶点疗法的创新之一,尤其是在糖尿病肾病方面。因此,本研究的目的是通过计算机模拟研究,揭示体腔液中基于肽的代谢物作为糖尿病肾病多靶点疗法的作用。利用UCSF Chimera软件构建体腔液肽的三维结构。分别使用ToxinPred和AllerTop网站检测肽的毒性和致敏性。从PDBJ数据库中获取蛋白激酶Bα亚型(AKT1)、血管内皮生长因子受体2(VEGFR2)、表皮生长因子受体(EGFR)、α-葡萄糖苷酶和葡萄糖激酶的三维结构。使用MOE软件进行分子对接。在这项计算机模拟研究中,肽9(-10.32千卡/摩尔)、肽1(-9.41千卡/摩尔)和肽3(-9.55千卡/摩尔)分别显示为EGFR、AKT1和VEGFR2的特异性三磷酸腺苷竞争性抑制剂。肽8(-11.06千卡/摩尔)可通过结合其活性位点特异性抑制α-葡萄糖苷酶。预测肽1(-9.80千卡/摩尔)通过阻断其活性位点特异性抑制葡萄糖激酶活性。分子动力学模拟证实了与受体蛋白的稳定相互作用。总之,基于计算机模拟分析,体腔液肽不仅已显示出可缓解糖尿病肾病,还能稳定血糖水平并预防高血糖。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/c819aa2ce1fd/NarraJ-5-e1180-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/a17a49f83e16/NarraJ-5-e1180-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/ef22e42d546b/NarraJ-5-e1180-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/3f4c520de72f/NarraJ-5-e1180-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/5d1fed6add5a/NarraJ-5-e1180-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/7d64b52bc6b0/NarraJ-5-e1180-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/c819aa2ce1fd/NarraJ-5-e1180-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/a17a49f83e16/NarraJ-5-e1180-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/ef22e42d546b/NarraJ-5-e1180-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/3f4c520de72f/NarraJ-5-e1180-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/5d1fed6add5a/NarraJ-5-e1180-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/7d64b52bc6b0/NarraJ-5-e1180-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/756a/12059842/c819aa2ce1fd/NarraJ-5-e1180-g006.jpg

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