Yao Linlin, Liu Baoyan, Wang Yong
Shandong First Medical University affiliated occupational disease Hospital (Shandong Occupational Disease Hospital), Jinan, 250062, Shandong Province, China.
Shandong Academy of Occupational Health and Occupational Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China.
Sci Rep. 2025 May 14;15(1):16801. doi: 10.1038/s41598-025-01759-9.
Idiopathic pulmonary fibrosis (IPF) is a progressive lung disease. Recent evidence suggests that the pathogenesis of IPF may involve abnormalities in mitochondrial energy metabolism. This study aimed to identify mitochondrial energy metabolism related differentially expressed genes (MEMRDEGs) and to elucidate their potential mechanistic involvement in IPF. We employed a multistep bioinformatics approach, including data extraction from the Gene Expression Omnibus database, removal of batch effects, and normalization and differential gene expression analyses. We then conducted Gene Ontology, Kyoto Encyclopedia of Genes and Genomes enrichment, and gene set enrichment analyses. A protein-protein interaction network was constructed from the STRING database, and hub genes were identified. Receiver operating characteristic curve analysis was performed to evaluate immune infiltration. Our integrated analysis of IPF datasets identified 25 MEMRDEGs. Nine hub genes emerged as central to mitochondrial energy metabolism in IPF. COX5A, EHHADH, and SDHB are potential biomarkers for diagnosing IPF with high accuracy. Single-sample gene set enrichment analysis revealed significant differences in the abundances of specertainfic immune cell types between IPF samples and controls. In conclusion, COX5A, EHHADH, and SDHB are potential biomarkers for the high-accuracy diagnosis of IPF. These findings pave the way for further investigations into the molecular mechanisms underlying IPF.
特发性肺纤维化(IPF)是一种进行性肺部疾病。最近的证据表明,IPF的发病机制可能涉及线粒体能量代谢异常。本研究旨在鉴定与线粒体能量代谢相关的差异表达基因(MEMRDEGs),并阐明它们在IPF中潜在的作用机制。我们采用了多步骤生物信息学方法,包括从基因表达综合数据库中提取数据、消除批次效应以及进行标准化和差异基因表达分析。然后,我们进行了基因本体论、京都基因与基因组百科全书富集分析以及基因集富集分析。利用STRING数据库构建了蛋白质-蛋白质相互作用网络,并鉴定了枢纽基因。进行了受试者工作特征曲线分析以评估免疫浸润情况。我们对IPF数据集的综合分析确定了25个MEMRDEGs。九个枢纽基因在IPF的线粒体能量代谢中起着核心作用。COX5A、EHHADH和SDHB是用于高精度诊断IPF的潜在生物标志物。单样本基因集富集分析显示,IPF样本与对照之间特定免疫细胞类型的丰度存在显著差异。总之,COX5A、EHHADH和SDHB是用于IPF高精度诊断的潜在生物标志物。这些发现为进一步研究IPF的分子机制铺平了道路。