计算机网络毒理学、分子对接和多层次生物信息学揭示了甲基丁香酚诱导人类肝细胞癌的机制。
In Silico Network Toxicology, Molecular Docking, and Multi-Level Bioinformatics Reveal Methyl Eugenol-Induced Hepatocellular Carcinoma Mechanisms in Humans.
作者信息
Karakuş Fuat, Tanrıverdi Zübeyde, Kuzu Burak
机构信息
Department of Pharmaceutical Toxicology, Faculty of Pharmacy, Van Yuzuncu Yil University, Van, Turkey.
Department of Pharmaceutical Toxicology, Faculty of Pharmacy, Ağrı İbrahim Çeçen University, Ağrı, Turkey.
出版信息
Cancer Med. 2025 May;14(10):e70768. doi: 10.1002/cam4.70768.
BACKGROUND
Methyl eugenol (ME), a natural compound found in various essential oils, has recently been classified as a Group 2A carcinogen by the International Agency for Research on Cancer.
METHODS
This study aims to investigate the potential molecular mechanisms and underlying ME-induced hepatocellular carcinoma (HCC) in humans using network toxicology, molecular docking, and integrative bioinformatics approaches, including transcriptomic and survival analyses of human HCC datasets.
RESULTS
Enrichment analysis highlighted significant associations with pathways related to steroid metabolic processes, extracellular exosomes, and diverse binding activities. KEGG pathway enrichment further implicated metabolic pathways in ME-induced HCC development. Integration of STRING and Cytoscape analyses identified 14 hub targets, including key proteins such as AURKB, CCNB1, CDK1, and PLK1. Molecular docking studies demonstrated weak binding affinities of ME to these targets compared to their specific inhibitors. However, microarray data and survival analyses of human HCC samples revealed that AURKB, CCNB1, CDK1, and PLK1 are upregulated in HCC, with higher expression levels correlating with poorer overall survival, particularly for CCNB1.
CONCLUSIONS
These findings suggest that ME exposure may enhance the expression of these genes in hepatocytes, disrupting the cell cycle and promoting proliferation. This study provides valuable insights into the molecular mechanisms of ME-induced HCC in humans and highlights potential therapeutic targets, such as CCNB1, for further investigation.
背景
甲基丁香酚(ME)是一种存在于多种香精油中的天然化合物,最近被国际癌症研究机构列为2A类致癌物。
方法
本研究旨在利用网络毒理学、分子对接和整合生物信息学方法,包括对人类肝癌数据集的转录组学和生存分析,研究ME诱导人类肝细胞癌(HCC)的潜在分子机制和根本原因。
结果
富集分析突出了与类固醇代谢过程、细胞外囊泡和多种结合活性相关途径的显著关联。KEGG通路富集进一步表明代谢通路在ME诱导的HCC发展中起作用。STRING和Cytoscape分析的整合确定了14个枢纽靶点,包括AURKB、CCNB1、CDK1和PLK1等关键蛋白。分子对接研究表明,与它们的特异性抑制剂相比,ME与这些靶点的结合亲和力较弱。然而,人类HCC样本的微阵列数据和生存分析显示,AURKB、CCNB1、CDK1和PLK1在HCC中上调,表达水平越高,总体生存率越低,尤其是CCNB1。
结论
这些发现表明,接触ME可能会增强这些基因在肝细胞中的表达,破坏细胞周期并促进增殖。本研究为ME诱导人类HCC的分子机制提供了有价值的见解,并突出了潜在的治疗靶点,如CCNB1,以供进一步研究。