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水稻中铁生物强化目标蛋白OsVIT2介导液泡铁转运的分子基础

Molecular Basis for Vacuolar Iron Transport by OsVIT2, a Target for Iron Biofortification in Rice.

作者信息

Arend L B, Lima D S, Costa M G S, Ricachenevsky F K, Verli H

机构信息

Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil.

Fundação Oswaldo Cruz, Rio de Janeiro, Rio Grande do Sul, Brazil.

出版信息

Proteins. 2025 Oct;93(10):1717-1731. doi: 10.1002/prot.26843. Epub 2025 May 15.

Abstract

Iron deficiency is the prevalent and most widespread nutritional shortfall for humans, affecting over 30% of the global population and leading to anemia, particularly among preschool-aged children and pregnant women in developing countries. Simultaneously, while half of the world's population depends on rice (Oryza sativa L.) as a staple food, this cereal does not provide a sufficient amount of that micronutrient to meet these people's nutritional needs: even when iron is readily available in the soil, it does not accumulate in the consumed portion of the grain, namely, the starchy endosperm, being instead retained in the aleurone layer, in the pericarp and in the embryo. In this context, the present work applies computational biology tools-such as normal mode analysis and molecular dynamics simulations-to elucidate the behavior and transport mechanism of the Vacuolar Iron Transporter 2 (OsVIT2), a central protein for iron homeostasis in rice, with the objective of laying the foundations for future OsVIT2 engineering projects that could be articulated with ongoing efforts to promote iron biofortification in rice. We shed light on the interplay between protonation state, configuration and hydration of OsVIT2's pore; on the mechanics of its opening and on the ever-shifting hydrogen bond network contained within it. We also explore the potential contribution of the "flexible arms" to the iron-capturing function performed by the cytoplasmic domain.

摘要

缺铁是人类中普遍且最为广泛的营养不足问题,影响着超过30%的全球人口,并导致贫血,特别是在发展中国家的学龄前儿童和孕妇中。同时,虽然世界上一半的人口以水稻(Oryza sativa L.)为主食,但这种谷物无法提供足够量的该种微量营养素来满足这些人的营养需求:即使土壤中铁元素易于获取,它也不会在谷物的可食用部分即淀粉胚乳中积累,而是保留在糊粉层、果皮和胚中。在此背景下,本研究应用计算生物学工具,如正常模式分析和分子动力学模拟,来阐明液泡铁转运蛋白2(OsVIT2)的行为和转运机制,OsVIT2是水稻中铁稳态的核心蛋白,目的是为未来的OsVIT2工程项目奠定基础,这些项目可以与目前促进水稻铁生物强化的努力相结合。我们揭示了OsVIT2孔的质子化状态、构象和水合作用之间的相互作用;其开放机制以及其中不断变化的氢键网络。我们还探讨了“柔性臂”对细胞质结构域执行的铁捕获功能的潜在贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/241d/12433260/872db3fffd99/PROT-93-1717-g008.jpg

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