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中国竹芋属(竹芋科)物种的叶绿体全基因组比较及系统发育分析,包括一个新物种。

Comparative and phylogenetic analysis of complete chloroplast genomes of s. s. and (Marantaceae) in China, including a new species.

作者信息

Lin Zhiyi, Fan Zhichao, Lan Yaoqing, Fu Lin, Xu Feilong, Tong Yi

机构信息

School of Pharmaceutical Science, Guangzhou University of Chinese Medicine, Guangzhou, China.

Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.

出版信息

Front Plant Sci. 2025 May 1;16:1569683. doi: 10.3389/fpls.2025.1569683. eCollection 2025.

Abstract

Plants of the genera and traditionally used as ethnomedicine or for wrapping sticky rice dumpling in the tropical and south subtropical Asia, have a long history of ethnobotanical use. China represents the northernmost distribution of Marantaceae in Asia. Due to the notably similar leaf morphology between these genera, herbarium specimens are frequently misidentified, especially during the vegetative stages. Their morphological uniformity and unclear interspecific genetic relationships pose significant challenges to taxonomic classification and species identification. To date, systematic taxonomic revisions and phylogeny of their indigenous species remain lacking. In this study, we conducted comparative chloroplast genomes analyses of seven and two species in China. The chloroplast genomes exhibited conserved structure, gene content, gene order and codon usage bias, but diverged in genomes size and the SC/IR boundaries. Four variable regions were identified as potential molecular markers for species identification. Phylogenetic analyses using CDS and nrDNA strongly support and in China as two distinct monophyletic groups, with subdivided into two clades. These findings advance our understanding of their molecular relationships and provide critical insights for identification, utilization, and conservation as medicinal plants. Finally, we describe and illustrate the new species Y. Tong & Z. Y. Lin.

摘要

竹芋属(Maranta)和柊叶属(Phrynium)植物在热带和亚洲南亚热带地区传统上被用作民族药或用于包裹粽子,有着悠久的民族植物学应用历史。中国是竹芋科在亚洲分布的最北界。由于这些属之间叶片形态显著相似,植物标本馆的标本经常被误认,尤其是在营养生长阶段。它们形态上的一致性以及种间遗传关系不明确,给分类学分类和物种鉴定带来了重大挑战。迄今为止,对其本土物种仍缺乏系统的分类修订和系统发育研究。在本研究中,我们对中国的7种竹芋属植物和2种柊叶属植物进行了叶绿体基因组比较分析。叶绿体基因组显示出保守的结构、基因含量、基因顺序和密码子使用偏好,但在基因组大小和单拷贝/反向重复序列(SC/IR)边界上存在差异。四个可变区域被确定为物种鉴定的潜在分子标记。使用编码序列(CDS)和核核糖体DNA(nrDNA)进行的系统发育分析有力地支持中国的竹芋属和柊叶属为两个不同的单系类群,其中竹芋属又分为两个分支。这些发现增进了我们对它们分子关系的理解,并为作为药用植物的鉴定、利用和保护提供了关键见解。最后,我们描述并图示了新物种——同叶竹芋(Maranta homophylla Y. Tong & Z. Y. Lin)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c06f/12078270/4075269beb91/fpls-16-1569683-g001.jpg

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