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LitSense 2.0:具有句子和段落级知识发现功能的人工智能驱动的生物医学信息检索。

LitSense 2.0: AI-powered biomedical information retrieval with sentence and passage level knowledge discovery.

作者信息

Yeganova Lana, Kim Won, Tian Shubo, Comeau Donald C, Wilbur W John, Lu Zhiyong

机构信息

Division of Intramural Research (DIR), National Library of Medicine (NLM), National Institutes of Health (NIH), MD 20894 Bethesda, United States.

出版信息

Nucleic Acids Res. 2025 Jul 7;53(W1):W361-W368. doi: 10.1093/nar/gkaf417.

DOI:10.1093/nar/gkaf417
PMID:40377097
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12230651/
Abstract

LitSense 2.0 (https://www.ncbi.nlm.nih.gov/research/litsense2/) is an advanced biomedical search system enhanced with dense vector semantic retrieval, designed for accessing literature on sentence and paragraph levels. It provides unified access to 38 million PubMed abstracts and 6.6 million full-length articles in the PubMed Central (PMC) Open Access subset, encompassing 1.4 billion sentences and ∼300 million paragraphs, and is updated weekly. Compared to PubMed and PMC, the primary platforms for biomedical information search, LitSense offers cross-platform functionality by searching seamlessly across both PubMed and PMC and returning relevant results at a more granular level. Building on the success of the original LitSense launched in 2018, LitSense 2.0 introduces two major enhancements. The first is the addition of paragraph-level search: users can now choose to search either against sentences or against paragraphs. The second is improved retrieval accuracy via a state-of-the-art biomedical text encoder, ensuring more reliable identification of relevant results across the entire biomedical literature.

摘要

LitSense 2.0(https://www.ncbi.nlm.nih.gov/research/litsense2/)是一个先进的生物医学搜索系统,通过密集向量语义检索得到增强,旨在实现对句子和段落层面文献的访问。它提供对3800万篇PubMed摘要以及美国国立医学图书馆(NLM)的生物医学文献数据库(PMC)开放获取子集中660万篇全文文章的统一访问,涵盖14亿个句子和约3亿个段落,并且每周更新。与生物医学信息搜索的主要平台PubMed和PMC相比,LitSense通过在PubMed和PMC上无缝搜索并在更细粒度级别返回相关结果,提供跨平台功能。基于2018年推出的原始LitSense的成功,LitSense 2.0引入了两项重大改进。第一项是增加了段落级搜索:用户现在可以选择针对句子或段落进行搜索。第二项是通过先进的生物医学文本编码器提高检索准确性,确保在整个生物医学文献中更可靠地识别相关结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1769/12230651/d28dfa273eed/gkaf417figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1769/12230651/d28dfa273eed/gkaf417figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1769/12230651/d28dfa273eed/gkaf417figgra1.jpg

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Comput Biol Med. 2024 Oct;181:109072. doi: 10.1016/j.compbiomed.2024.109072. Epub 2024 Aug 30.
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PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge.PubTator 3.0:一款人工智能驱动的文献资源,用于解锁生物医学知识。
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The Multienzyme Complex Nature of Dehydroepiandrosterone Sulfate Biosynthesis.硫酸脱氢表雄酮生物合成的多酶复合物性质。
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PubMed and beyond: biomedical literature search in the age of artificial intelligence.PubMed 及其以外:人工智能时代的生物医学文献检索。
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BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text.BactInt:一种用于从生物医学文本中提取细菌间关联的领域驱动迁移学习方法。
Comput Biol Chem. 2024 Apr;109:108012. doi: 10.1016/j.compbiolchem.2023.108012. Epub 2024 Jan 4.
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MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval.MedCPT:利用大规模 PubMed 检索日志进行零样本生物医学信息检索的对比预训练 Transformer。
Bioinformatics. 2023 Nov 1;39(11). doi: 10.1093/bioinformatics/btad651.
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