Fernández-Vargas Rachelle, Jiménez-Alpízar Sara, Leandro-Arce Valeria, Mendoza-Guido Bradd, Rojas-Jimenez Keilor
Escuela de Biología, Universidad Costa Rica, San José, Costa Rica.
Programa de Posgrado en Microbiología, Parasitología, Química Clínica e Inmunología (PPMPGCI), Universidad Costa Rica, San José, Costa Rica.
Access Microbiol. 2025 May 16;7(5). doi: 10.1099/acmi.0.000990.v3. eCollection 2025.
Here, we report the draft genome sequences of four spp. isolates obtained from root nodules of the native legumes , , and in tropical forests of Costa Rica. Genomes ranged from 8.6 to 9.8 Mb with GC contents between 62.8% and 63.8%. Phylogenomic analysis, along with average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) comparisons, confirmed that these isolates represent potential new species. ANI values ranged from 88.3% to 90.3%, and dDDH values from 28.8% to 41.8%, compared with their closest species. Functional annotation revealed some genes related to nitrogen fixation (, , ) and nodulation capacity (, , ). These results provide insights into the diversity and symbiotic capabilities of in tropical ecosystems.
在此,我们报告了从哥斯达黎加热带森林中本地豆科植物、、和的根瘤中获得的4种菌株的基因组序列草图。基因组大小在8.6至9.8 Mb之间,GC含量在62.8%至63.8%之间。系统基因组分析以及平均核苷酸同一性(ANI)和数字DNA-DNA杂交(dDDH)比较证实,这些分离株代表潜在的新物种。与它们最接近的物种相比,ANI值在88.3%至90.3%之间,dDDH值在28.8%至41.8%之间。功能注释揭示了一些与固氮(、、)和结瘤能力(、、)相关的基因。这些结果为热带生态系统中的多样性和共生能力提供了见解。