整合代谢组学与网络药理学分析以揭示温肾阳汤治疗慢性肾脏病的机制
Integrated metabolomics and network pharmacology analysis to reveal the mechanisms of Wenshenyang decoction in the treatment of chronic kidney disease.
作者信息
Jin Ge, Zhao Zongjiang
机构信息
School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing, China.
出版信息
Front Pharmacol. 2025 Apr 30;16:1500463. doi: 10.3389/fphar.2025.1500463. eCollection 2025.
BACKGROUND
Wenshenyang decoction (WSY) has been shown to have a considerable effect on restoring renal function and improving kidney Yang deficiency syndrome in patients with CKD. However, its mechanism remains unclear.
AIMS
This study aimed to integrated metabolomics and network pharmacology analysis combined with experiments to reveal the mechanisms.
MATERIALS AND METHODS
Patients were selected from a clinical trial. LC-MS (Liquid chromatography-mass spectrometry) was used to investigate the differential metabolites and pathways. Spearman correlation analysis was performed between differential metabolites and clinical phenotypes. "Drug-component-differential metabolite" network was constructed to predict the core components and hub genes, and validated by molecular docking. On this basis, the effects of core components of WSY on the viability of Human Kidney-2 cells (HK-2) induced by doxorubicin (DOX) was detected by CCK-8, and RT-qPCR (Reverse transcription quantitative polymerase chain reaction) was used to detect the mRNA expression level of hub genes and related targets.
KEY FINDINGS
LC-MS detected 54 differential metabolites, of which 35 metabolites showed up regulated, and 19 decreased. Spearman analysis showed that the differential metabolites were correlated with the clinical phenotype. KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment analysis showed that WSY mainly affected linoleic acid metabolism, FcεRI signaling pathway, and unsaturated fatty acid biosynthesis. The "Drug-component-differential metabolite" network showed that the core components of WSY were quercetin, luteolin and kaempferol, and the hub genes were PTGS2, AKT1, MMP9, EGFR and MMP2. Molecular docking showed that they had good biological binding capacity. cell experiments further showed that quercetin, luteolin and kaempferol could significantly activate the cells and reduce the mRNA levels of PTGS2, AKT1, MMP9, EGFR, MMP2, and ANGPTL4, and increase the level of FGFR1, SIRT3 and the glucocorticoid receptor (GR).
SIGNIFICANCE
WSY has multi-component and multi-target properties in the treatment of CKD kidney Yang deficiency syndrome, and its mechanism may be related to anti-inflammatory and anti-fibrotic effects. This study provides a methodological reference for the treatment of CKD.
背景
温肾阳汤(WSY)已被证明对恢复慢性肾脏病(CKD)患者的肾功能和改善肾阳虚证有显著效果。然而,其作用机制仍不清楚。
目的
本研究旨在通过整合代谢组学和网络药理学分析并结合实验来揭示其机制。
材料与方法
从一项临床试验中选取患者。采用液相色谱 - 质谱联用(LC - MS)技术研究差异代谢物和代谢途径。对差异代谢物与临床表型进行Spearman相关性分析。构建“药物 - 成分 - 差异代谢物”网络以预测核心成分和枢纽基因,并通过分子对接进行验证。在此基础上,采用CCK - 8法检测WSY核心成分对阿霉素(DOX)诱导的人肾2细胞(HK - 2)活力的影响,采用逆转录定量聚合酶链反应(RT - qPCR)检测枢纽基因及相关靶点的mRNA表达水平。
主要发现
LC - MS检测到54种差异代谢物,其中35种代谢物上调,19种下降。Spearman分析表明差异代谢物与临床表型相关。京都基因与基因组百科全书(KEGG)富集分析表明,WSY主要影响亚油酸代谢、FcεRI信号通路和不饱和脂肪酸生物合成。“药物 - 成分 - 差异代谢物”网络显示,WSY的核心成分是槲皮素、木犀草素和山奈酚,枢纽基因是PTGS2、AKT1、MMP9、EGFR和MMP2。分子对接表明它们具有良好的生物结合能力。细胞实验进一步表明,槲皮素、木犀草素和山奈酚可显著激活细胞,降低PTGS2、AKT1、MMP9、EGFR、MMP2和ANGPTL4的mRNA水平,并提高FGFR1、SIRT3和糖皮质激素受体(GR)的水平。
意义
WSY在治疗CKD肾阳虚证方面具有多成分、多靶点特性,其机制可能与抗炎和抗纤维化作用有关。本研究为CKD的治疗提供了方法学参考。