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与divarasib结合的KRAS结构突出了有效结合开关II口袋的特征。

The structure of KRAS bound to divarasib highlights features of potent switch-II pocket engagement.

作者信息

Fernando Micah C, Craven Gregory B, Shokat Kevan M

机构信息

Department of Cellular and Molecular Pharmacology and Howard Hughes Medical Institute, University of California, San Francisco, CA, USA.

Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.

出版信息

Small GTPases. 2024 Dec;15(1):1-7. doi: 10.1080/21541248.2025.2505441. Epub 2025 May 20.

DOI:10.1080/21541248.2025.2505441
PMID:40391409
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12101598/
Abstract

KRAS is the most frequently mutated oncogene in human cancer. In multiple types of cancer, a missense mutation at codon 12 substitutes a glycine for a cysteine, causing hyperactivation of the GTPase and enhanced MAPK signalling. Recent drug discovery efforts culminating from work during the past decade have resulted in two FDA-approved inhibitors, sotorasib and adagrasib, which target the KRAS mutant allele. Ongoing medicinal chemistry efforts across academia and industry have continued developing more potent and efficacious KRAS inhibitors. One agent in late-stage clinical trials, divarasib, has demonstrated robust overall response rates, in some cases greater than currently approved agents. Divarasib also exhibits enhanced covalent target engagement and significant specificity for KRAS, yet the structural details of its binding have not been published. Here we report a high-resolution crystal structure of cysteine-light KRAS-4B in complex with divarasib. Though it binds in the same allosteric pocket as sotorasib and adagrasib, the switch-II loop in each crystal structure takes on a distinct conformation differing as much as 5.6 Å between the Cα atom of residue 65 with sotorasib. Additionally, we highlight structural features of the drug complex that may guide future medicinal chemistry efforts targeting various alleles.

摘要

KRAS是人类癌症中最常发生突变的致癌基因。在多种类型的癌症中,密码子12处的错义突变会将甘氨酸替换为半胱氨酸,导致GTP酶过度激活和MAPK信号增强。过去十年的研究工作最终促成了两种获得美国食品药品监督管理局(FDA)批准的抑制剂——索托拉西布和阿达格拉西布,它们靶向KRAS突变等位基因。学术界和工业界正在进行的药物化学研究一直在持续开发更有效、更高效的KRAS抑制剂。一种处于后期临床试验阶段的药物——迪瓦拉西布,已显示出强劲的总体缓解率,在某些情况下高于目前已获批的药物。迪瓦拉西布还表现出增强的共价靶点结合能力以及对KRAS的显著特异性,但其结合的结构细节尚未公布。在此,我们报告了无半胱氨酸的KRAS - 4B与迪瓦拉西布复合物的高分辨率晶体结构。尽管它与索托拉西布和阿达格拉西布结合在相同的变构口袋中,但每个晶体结构中的开关II环呈现出不同的构象,与索托拉西布相比,残基65的Cα原子之间的差异高达5.6 Å。此外,我们强调了药物复合物的结构特征,这些特征可能为未来针对各种等位基因的药物化学研究提供指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d3/12101598/cb871d4343cc/KSGT_A_2505441_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d3/12101598/78442543eb0e/KSGT_A_2505441_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d3/12101598/cb871d4343cc/KSGT_A_2505441_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d3/12101598/78442543eb0e/KSGT_A_2505441_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d3/12101598/cb871d4343cc/KSGT_A_2505441_F0002_OC.jpg

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