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一种综合的结构和生物物理方法来研究……中的碳代谢

An integrated structural and biophysical approach to study carbon metabolism in .

作者信息

Huang Evelyn Y-W, Kuang Francis, Wu Haozhe, Yu Chai Xin, Chen Xiaoxu, Vasku Glenda, Nguyen Le Thao Anh, Jeppe Katherine J, Coussens Anna K, Kwai Brooke X C, Leung Ivanhoe K H

机构信息

School of Chemistry and Bio21 Molecular Science & Biotechnology Institute, The University of Melbourne, Parkville, VIC, Australia.

Monash Proteomics and Metabolomics Platform, Monash University, Melbourne, VIC, Australia.

出版信息

QRB Discov. 2025 Mar 12;6:e15. doi: 10.1017/qrd.2025.6. eCollection 2025.

Abstract

Metabolic enzymes are the catalysts that drive the biochemical reactions essential for sustaining life. Many of these enzymes are tightly regulated by feedback mechanisms. To fully understand their roles and modulation, it is crucial to investigate the relationship between their structure, catalytic mechanism, and function. In this perspective, by using three examples from our studies on () isocitrate lyase and related proteins, we highlight how an integrated approach combining structural, activity, and biophysical data provides insights into their biological functions. These examples underscore the importance of employing fast-fail experiments at the early stages of a research project, emphasise the value of complementary techniques in validating findings, and demonstrate how data combined with chemical, biochemical, and physiological knowledge can lead to a broader understanding of metabolic adaptations in pathogenic bacteria. Finally, we address the unexplored questions in metabolism and discuss how we expand our approach to include microbiological and bioanalytical techniques to further our understanding. Such an integrated and interdisciplinary strategy has the potential to uncover novel regulatory mechanisms and identify new therapeutic opportunities for the eradication of tuberculosis. The approach can also be broadly applied to investigate other biochemical networks and complex biological systems.

摘要

代谢酶是驱动维持生命所必需的生化反应的催化剂。其中许多酶受到反馈机制的严格调控。为了全面理解它们的作用和调节方式,研究它们的结构、催化机制和功能之间的关系至关重要。从这个角度来看,通过我们对()异柠檬酸裂解酶及相关蛋白研究中的三个例子,我们强调了结合结构、活性和生物物理数据的综合方法如何为它们的生物学功能提供见解。这些例子强调了在研究项目早期采用快速失败实验的重要性,强调了互补技术在验证研究结果中的价值,并展示了数据与化学、生物化学和生理学知识相结合如何能更广泛地理解病原菌中的代谢适应。最后,我们讨论了代谢中尚未探索的问题,并探讨如何扩展我们的方法以纳入微生物学和生物分析技术,以加深我们的理解。这种综合和跨学科的策略有可能揭示新的调控机制,并确定根除结核病的新治疗机会。该方法还可广泛应用于研究其他生化网络和复杂生物系统。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/077e/12088919/c7aa1009bee8/S2633289225000067_fig1.jpg

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