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噬菌体At2及其宿主W4-4-4的基因组序列。

Genome sequences of phage At2 and its host W4-4-4.

作者信息

Wee Soon Keong, Yan Biaoguo, Mustaffa Su'Aidah Binte, Yap Eric Peng Huat

机构信息

Institute for Digital Molecular Analytics and Science, Nanyang Technological University, Singapore, Singapore.

Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.

出版信息

Microbiol Resour Announc. 2025 Jun 12;14(6):e0000925. doi: 10.1128/mra.00009-25. Epub 2025 May 22.

DOI:10.1128/mra.00009-25
PMID:40401949
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12160551/
Abstract

We present the genome sequences of phage At2 and its host strain W4-4-4, both isolated from a tropical mangrove swamp in Singapore. This report highlights the genetic features of both organisms, including antimicrobial resistance genes.

摘要

我们展示了噬菌体At2及其宿主菌株W4-4-4的基因组序列,二者均从新加坡的一个热带红树林沼泽中分离得到。本报告着重介绍了这两种生物体的遗传特征,包括抗微生物耐药基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e501/12160551/4c6e0300bc63/mra.00009-25.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e501/12160551/4c6e0300bc63/mra.00009-25.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e501/12160551/4c6e0300bc63/mra.00009-25.f001.jpg

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本文引用的文献

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GALAXY Workflow for Bacterial Next-Generation Sequencing De Novo Assembly and Annotation.用于细菌新一代测序从头组装和注释的银河工作流程。
Curr Protoc. 2021 Sep;1(9):e242. doi: 10.1002/cpz1.242.
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TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.TYGS 是一个自动化的高通量平台,用于最先进的基于基因组的分类学。
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
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VFDB 2019: a comparative pathogenomic platform with an interactive web interface.VFDB 2019:一个具有交互式网络界面的比较病原体基因组学平台。
Nucleic Acids Res. 2019 Jan 8;47(D1):D687-D692. doi: 10.1093/nar/gky1080.
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Biodegradation of phenol by Acinetobacter tandoii isolated from the gut of the termite.从白蚁肠道中分离的不动杆菌属 tandoii 对苯酚的生物降解。
Environ Sci Pollut Res Int. 2019 Nov;26(33):34067-34072. doi: 10.1007/s11356-018-3292-4. Epub 2018 Sep 27.
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Five novel carbapenem-hydrolysing OXA-type β-lactamase groups are intrinsic in Acinetobacter spp.五种新型碳青霉烯水解 OXA 型β-内酰胺酶组固有不动杆菌属。
J Antimicrob Chemother. 2018 Dec 1;73(12):3279-3284. doi: 10.1093/jac/dky359.
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.CRISPRCasFinder 是 CRISRFinder 的更新版本,包括一个可移植版本,性能得到增强,并集成了 Cas 蛋白搜索功能。
Nucleic Acids Res. 2018 Jul 2;46(W1):W246-W251. doi: 10.1093/nar/gky425.
7
Phage mobility is a core determinant of phage-bacteria coexistence in biofilms.噬菌体的移动性是噬菌体-细菌在生物膜中共存的核心决定因素。
ISME J. 2018 Feb;12(2):531-543. doi: 10.1038/ismej.2017.190. Epub 2017 Nov 10.
8
PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes.PHAST、PHASTER 和 PHASTEST:用于在细菌基因组中寻找噬菌体的工具。
Brief Bioinform. 2019 Jul 19;20(4):1560-1567. doi: 10.1093/bib/bbx121.
9
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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