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一种新型高通量单分子技术——DNA帘:在DNA代谢中的应用

A novel high-throughput single-molecule technique DNA curtain: Applications for DNA metabolism.

作者信息

An Soyeong, Kim Youngseo, Lee Ja Yil

机构信息

Department of Biological Sciences, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea.

Department of Biological Sciences, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea; Institute of Basic Science Center for Genomic Integrity, Ulsan 44919, Republic of Korea.

出版信息

Mol Cells. 2025 Jul;48(7):100224. doi: 10.1016/j.mocell.2025.100224. Epub 2025 May 20.

DOI:10.1016/j.mocell.2025.100224
PMID:40403877
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12175710/
Abstract

The advancement of single-molecule imaging techniques has significantly enhanced our understanding of biomolecular reactions and cellular processes that remain obscured in ensemble measurements. In particular, DNA curtains are high-throughput hybrid methods integrating total internal reflection fluorescence microscopy, lipid fluidity, microfluidics, and nano-fabrication, enabling the direct visualization of protein-DNA interactions in real time. The techniques have emerged as powerful tools for probing molecular dynamics of diverse DNA metabolic processes, including DNA damage repair and chromatin dynamics. This review not only highlights recent applications of DNA curtain techniques for elucidating mechanisms underlying DNA damage repair and chromatin dynamics, but also shows how DNA curtain techniques have provided novel insights into the interplay between DNA metabolic processes in the chromatin context.

摘要

单分子成像技术的进步显著增进了我们对生物分子反应和细胞过程的理解,而这些在整体测量中仍难以看清。特别是,DNA帘幕是一种高通量杂交方法,整合了全内反射荧光显微镜、脂质流动性、微流体技术和纳米制造技术,能够实时直接观察蛋白质与DNA的相互作用。这些技术已成为探究各种DNA代谢过程分子动力学的有力工具,包括DNA损伤修复和染色质动力学。本综述不仅强调了DNA帘幕技术在阐明DNA损伤修复和染色质动力学机制方面的最新应用,还展示了DNA帘幕技术如何为染色质环境中DNA代谢过程之间的相互作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/39ef44232187/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/9875350bb3b6/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/16dea816f863/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/ce6418d78050/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/39ef44232187/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/9875350bb3b6/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/16dea816f863/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/ce6418d78050/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57de/12175710/39ef44232187/gr4.jpg

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本文引用的文献

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Abo1 ATPase facilitates the dissociation of FACT from chromatin.Abo1三磷酸腺苷酶促进FACT从染色质上解离。
Nucleic Acids Res. 2025 Feb 8;53(4). doi: 10.1093/nar/gkae1229.
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Impaired binding affinity of YTHDC1 with METTL3/METTL14 results in R-loop accumulation in myelodysplastic neoplasms with DDX41 mutation.YTHDC1 与 METTL3/METTL14 结合亲和力受损导致 DDX41 突变的骨髓增生异常肿瘤中 R 环积累。
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Real-time single-molecule visualization using DNA curtains reveals the molecular mechanisms underlying DNA repair pathways.
利用 DNA 帘幕进行实时单分子可视化揭示了 DNA 修复途径的分子机制。
DNA Repair (Amst). 2024 Jan;133:103612. doi: 10.1016/j.dnarep.2023.103612. Epub 2023 Dec 14.
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Direct visualization of replication and R-loop collision using single-molecule imaging.使用单分子成像技术直接观察复制和 R 环碰撞。
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R-Loops in Genome Instability and Cancer.基因组不稳定与癌症中的R环
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Single-molecule fluorescence imaging techniques reveal molecular mechanisms underlying deoxyribonucleic acid damage repair.单分子荧光成像技术揭示了脱氧核糖核酸损伤修复背后的分子机制。
Front Bioeng Biotechnol. 2022 Sep 15;10:973314. doi: 10.3389/fbioe.2022.973314. eCollection 2022.
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Studying R-Loop Recognizing Proteins Using Single-Molecule DNA Curtain Technique and Electrophoretic Mobility Shift Assay.使用单分子 DNA 幕技术和电泳迁移率变动分析研究 R 环识别蛋白。
Methods Mol Biol. 2022;2528:253-269. doi: 10.1007/978-1-0716-2477-7_16.
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Transcription-Coupled DNA Repair: From Mechanism to Human Disorder.转录偶联 DNA 修复:从机制到人类疾病。
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