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人类XIST:一种顺式作用沉默RNA的起源与分化

Human XIST: Origin and Divergence of a -Acting Silencing RNA.

作者信息

Navarro-Cobos Maria Jose, Brown Carolyn J

机构信息

Department of Medical Genetics, Molecular Epigenetics Group, Life Sciences Institute, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada.

出版信息

Noncoding RNA. 2025 May 1;11(3):35. doi: 10.3390/ncrna11030035.

DOI:10.3390/ncrna11030035
PMID:40407593
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12101419/
Abstract

Dimorphism of sex chromosomes often leads to a need for dosage compensation. In eutherian mammals, XIST, a long non-coding RNA, is expressed from the X chromosome that will be silenced, triggering X-chromosome inactivation (XCI). XIST originated from the ancestral protein-coding gene with contributions from various mobile elements that contributed to the striking domains of tandem repeats within the first and sixth exons. Modular domains of XIST are now involved in recruiting heterochromatic marks and proteins essential for XCI initiation and maintenance. This review presents a comparative analysis of human with five other eutherian mammals-chimpanzees, cats, pigs, sheep, and mice-examining conservation across exons as well as the tandem repeats. Notably, repeats exhibited higher conservation than exons, underscoring their functional importance. Additionally, a species-specific G repeat, previously described in pigs, was also identified in sheep and cats. These findings provide insights into the domains of XIST, a -acting silencer that has been used to proposed to alleviate the impact of a supernumerary chromosome in Down syndrome.

摘要

性染色体的二态性常常导致剂量补偿的需求。在真兽亚纲哺乳动物中,一种长链非编码RNA——XIST,从将被沉默的X染色体上表达,从而引发X染色体失活(XCI)。XIST起源于祖先的蛋白质编码基因,多种移动元件对其有贡献,这些元件促成了第一和第六外显子内串联重复序列的显著结构域。XIST的模块化结构域现在参与招募异染色质标记以及XCI起始和维持所必需的蛋白质。本综述对人类与其他五种真兽亚纲哺乳动物——黑猩猩、猫、猪、绵羊和小鼠——进行了比较分析,研究了外显子以及串联重复序列的保守性。值得注意的是,重复序列的保守性高于外显子,这突出了它们的功能重要性。此外,先前在猪中描述的一种物种特异性G重复序列,在绵羊和猫中也被发现。这些发现为XIST的结构域提供了见解,XIST是一种反式作用沉默子,有人提出它可用于减轻唐氏综合征中额外染色体的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef08/12101419/8cfa9acbabbf/ncrna-11-00035-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef08/12101419/99e3b37d521f/ncrna-11-00035-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef08/12101419/86efec64f36b/ncrna-11-00035-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef08/12101419/8cfa9acbabbf/ncrna-11-00035-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef08/12101419/99e3b37d521f/ncrna-11-00035-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef08/12101419/86efec64f36b/ncrna-11-00035-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef08/12101419/8cfa9acbabbf/ncrna-11-00035-g003.jpg

相似文献

1
Human XIST: Origin and Divergence of a -Acting Silencing RNA.人类XIST:一种顺式作用沉默RNA的起源与分化
Noncoding RNA. 2025 May 1;11(3):35. doi: 10.3390/ncrna11030035.
2
Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation.Spen 连接 RNA 介导的内源性逆转录病毒沉默和 X 染色体失活。
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Unique XCI evolution in Tokudaia: initial XCI of the neo-X chromosome in Tokudaia muenninki and function loss of XIST in Tokudaia osimensis.德久鼠独特的X染色体失活进化:日本德久鼠新X染色体的初始X染色体失活及冲绳德久鼠中XIST的功能丧失
Chromosoma. 2017 Dec;126(6):741-751. doi: 10.1007/s00412-017-0639-4. Epub 2017 Aug 2.
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Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development.真兽类哺乳动物在发育过程中使用多种策略来启动 X 染色体失活。
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Xist-mediated chromatin changes that establish silencing of an entire X chromosome in mammals.Xist 介导的染色质变化导致哺乳动物中整个 X 染色体失活。
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En bloc and segmental deletions of human XIST reveal X chromosome inactivation-involving RNA elements.整块和片段性缺失人 XIST 揭示了涉及 X 染色体失活的 RNA 元件。
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Xist RNA repeat E is essential for ASH2L recruitment to the inactive X and regulates histone modifications and escape gene expression.Xist RNA重复序列E对于ASH2L募集到失活的X染色体至关重要,并调节组蛋白修饰和逃逸基因表达。
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KDM6A facilitates Xist upregulation at the onset of X inactivation.KDM6A在X染色体失活开始时促进Xist上调。
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本文引用的文献

1
Phase separation paints Xi with Xist.相分离用Xist标记Xi。
Cell Res. 2025 Apr 14. doi: 10.1038/s41422-025-01116-5.
2
A biophysical basis for the spreading behavior and limited diffusion of Xist.Xist基因扩散行为及有限扩散的生物物理基础。
Cell. 2025 Feb 20;188(4):978-997.e25. doi: 10.1016/j.cell.2024.12.004. Epub 2025 Jan 16.
3
Recruitment of chromatin remodelers by XIST B-repeat region is variably dependent on HNRNPK.XIST B重复区域对染色质重塑因子的招募在不同程度上依赖于HNRNPK。
Hum Mol Genet. 2025 Feb 1;34(3):229-238. doi: 10.1093/hmg/ddae173.
4
Compensation of gene dosage on the mammalian X.哺乳动物 X 染色体上的基因剂量补偿
Development. 2024 Aug 1;151(15). doi: 10.1242/dev.202891. Epub 2024 Aug 14.
5
Evolution and regulation of animal sex chromosomes.动物性染色体的进化与调控
Nat Rev Genet. 2025 Jan;26(1):59-74. doi: 10.1038/s41576-024-00757-3. Epub 2024 Jul 18.
6
Unraveling the role of Xist in X chromosome inactivation: insights from rabbit model and deletion analysis of exons and repeat A.揭示 Xist 在 X 染色体失活中的作用:来自兔模型和外显子及重复 A 缺失分析的见解。
Cell Mol Life Sci. 2024 Mar 29;81(1):156. doi: 10.1007/s00018-024-05151-0.
7
Species-specific regulation of XIST by the JPX/FTX orthologs.JPX/FTX 直系同源物对 XIST 的种属特异性调控。
Nucleic Acids Res. 2023 Mar 21;51(5):2177-2194. doi: 10.1093/nar/gkad029.
8
Derivation of a minimal functional XIST by combining human and mouse interaction domains.通过组合人类和小鼠相互作用结构域,衍生出最小功能的 XIST。
Hum Mol Genet. 2023 Apr 6;32(8):1289-1300. doi: 10.1093/hmg/ddac285.
9
A lifelong duty: how Xist maintains the inactive X chromosome.一生的责任:Xist 如何维持失活的 X 染色体。
Curr Opin Genet Dev. 2022 Aug;75:101927. doi: 10.1016/j.gde.2022.101927. Epub 2022 Jun 16.
10
Large-Scale Analysis of X Inactivation Variations between Primed and Naïve Human Embryonic Stem Cells.大规模分析人胚胎干细胞中初始态和未初始态 X 染色体失活的差异。
Cells. 2022 May 24;11(11):1729. doi: 10.3390/cells11111729.