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发酵食品生态系统中的微生物相互作用与生态学

Microbial interactions and ecology in fermented food ecosystems.

作者信息

Auchtung Jennifer M, Hallen-Adams Heather E, Hutkins Robert

机构信息

Department of Food Science and Technology and Nebraska Food for Health Center, University of Nebraska, Lincoln, NE, USA.

出版信息

Nat Rev Microbiol. 2025 May 23. doi: 10.1038/s41579-025-01191-w.

DOI:10.1038/s41579-025-01191-w
PMID:40410356
Abstract

Fermented foods and beverages, produced by the intentional growth of microorganisms, have long been among the most widely consumed foods in the human diet. Whether microorganisms are added directly to food substrates, or the growth and activity of autochthonous microorganisms colonizing food substrates is encouraged by selective conditions, the production of organic acids, ethanol and other metabolic end products enhance the safety, shelf-life, sensory and functional properties of foods. Whereas some fermented foods may be produced by communities dominated by only a few taxa of limited phylogenetic diversity, others are produced through the concerted action of diverse microbial communities. In this Review, we describe the ecological interactions shaping microbial community structure and function across various categories of fermented foods by providing specific examples. We also describe how the manufacture, quality and sustainability of even traditional fermented foods can be improved by contemporary technologies. Finally, we briefly discuss current research on the ecological impact of microorganisms found in fermented food on the human gut.

摘要

通过微生物的有意培养制成的发酵食品和饮料,长期以来一直是人类饮食中消费最广泛的食品之一。无论是将微生物直接添加到食品基质中,还是通过选择性条件促进定殖在食品基质上的本地微生物的生长和活性,有机酸、乙醇和其他代谢终产物的产生都能提高食品的安全性、保质期、感官特性和功能特性。虽然有些发酵食品可能是由仅由少数有限系统发育多样性分类群主导的群落产生的,但其他发酵食品则是通过多种微生物群落的协同作用产生的。在本综述中,我们通过提供具体实例,描述了塑造各类发酵食品中微生物群落结构和功能的生态相互作用。我们还描述了当代技术如何能够改善甚至传统发酵食品的制造、质量和可持续性。最后,我们简要讨论了当前关于发酵食品中发现的微生物对人类肠道的生态影响的研究。

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Microbial interactions and ecology in fermented food ecosystems.发酵食品生态系统中的微生物相互作用与生态学
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本文引用的文献

1
The effects of fermented vegetables on the gut microbiota for prevention of cardiovascular disease.发酵蔬菜对肠道微生物群预防心血管疾病的影响。
Gut Microbiome (Camb). 2024 May 9;5:e6. doi: 10.1017/gmb.2024.4. eCollection 2024.
2
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.2500 份食物宏基因组中的未探索微生物多样性及其与人类微生物组的联系。
Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Epub 2024 Aug 29.
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Synthetic microbial communities: A gateway to understanding resistance, resilience, and functionality in spontaneously fermented food microbiomes.
人工合成微生物群落:理解自然发酵食品微生物组中抗性、弹性和功能的途径。
Food Res Int. 2024 Sep;192:114780. doi: 10.1016/j.foodres.2024.114780. Epub 2024 Jul 15.
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Research advances in technologies and mechanisms to regulate vinegar flavor.食醋风味调控技术与机制研究进展。
Food Chem. 2024 Dec 1;460(Pt 3):140783. doi: 10.1016/j.foodchem.2024.140783. Epub 2024 Aug 5.
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Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation.新型味增塑造独特的微生物生态系统:美味可持续食品创新的机会。
Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. Epub 2024 May 10.
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Intestinal colonization resistance in the context of environmental, host, and microbial determinants.肠道定植抵抗力的环境、宿主和微生物决定因素。
Cell Host Microbe. 2024 Jun 12;32(6):820-836. doi: 10.1016/j.chom.2024.05.002.
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Synthetic microbial communities: Novel strategies to enhance the quality of traditional fermented foods.合成微生物群落:提高传统发酵食品质量的新策略。
Compr Rev Food Sci Food Saf. 2024 Jul;23(4):e13388. doi: 10.1111/1541-4337.13388.
8
The detailed analysis of the microbiome and resistome of artisanal blue-veined cheeses provides evidence on sources and patterns of succession linked with quality and safety traits.对手工蓝纹奶酪的微生物组和耐药基因组的详细分析为与质量和安全特征相关的来源及演替模式提供了证据。
Microbiome. 2024 Apr 27;12(1):78. doi: 10.1186/s40168-024-01790-4.
9
Fungal-Bacterial Mutualism: Species and Strain-Dependent Simultaneous Modulation of Branched-Chain Esters and Indole Derivatives in Fermented Sausages through Metabolite Cross-Feeding.真菌-细菌共生关系:通过代谢物交叉喂养,物种和菌株依赖性地同时调节发酵香肠中的支链酯和吲哚衍生物。
J Agric Food Chem. 2024 Apr 17;72(15):8749-8759. doi: 10.1021/acs.jafc.3c08616. Epub 2024 Apr 5.
10
Annotation of 2,507 genomes.注释 2507 个基因组。
Microbiol Spectr. 2024 Apr 2;12(4):e0358223. doi: 10.1128/spectrum.03582-23. Epub 2024 Mar 15.