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、和是促进南非富含硫化物的伊西努卡泉中硫氧化与养分循环耦合的主要细菌类群。

, , and Are Major Bacterial Taxa Facilitating the Coupling of Sulfur Oxidation and Nutrient Recycling in the Sulfide-Rich Isinuka Spring in South Africa.

作者信息

Ogola Henry Joseph Oduor, Selvarajan Ramganesh, Ncube Somandla, Madikizela Lawrence

机构信息

Department of Environmental Sciences, College of Agriculture and Environmental Sciences (CAES), University of South Africa, Florida Science Campus, Johannesburg 1710, South Africa.

Institute of Deep-Sea Science and Engineering (IDSSE), Chinese Academy of Sciences (CAS), Sanya 572099, China.

出版信息

Biology (Basel). 2025 May 5;14(5):503. doi: 10.3390/biology14050503.

DOI:10.3390/biology14050503
PMID:40427692
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12108725/
Abstract

Sulfur cycling is a fundamental biogeochemical process, yet its microbial underpinnings in environments like the Isinuka sulfur pool remain poorly understood. Using high-throughput Illumina 16S rRNA sequencing and PICRUSt-based functional inference, we analyzed bacterial diversity and metabolic potential in sediment and water samples. Sediments, characterized by high sulfide/sulfate/thiosulfate, salinity, alkalinity, and organic matter content under anoxic conditions, supported diverse sulfur-reducing and organic-degrading bacteria, primarily from the Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria phyla. In contrast, the anoxic water column harbored a less diverse community dominated by α-, γ-, and β-Proteobacteria, including and . Sulfur oxidation genes (, ) were abundant in water, while sulfate reduction genes (, , and ) were concentrated in sediments. Core microbiome analysis identified , , and as functional keystones, integrating sulfur oxidation and nutrient recycling. Sediments supported dissimilatory sulfate-reducing bacteria (unclassified Desulfobacteraceae, , , , and ), while water samples were enriched in sulfur-oxidizing bacteria like . Metabolic profiling revealed extensive sulfur, nitrogen, and carbon cycling pathways, with sulfur autotrophic denitrification and anoxygenic photosynthesis coupling sulfur-nitrogen and sulfur-carbon cycles. This study provides key theoretical insights into the microbial dynamics in sulfur-rich environments, highlighting their roles in biogeochemical cycling and potential applications in environmental management.

摘要

硫循环是一个基本的生物地球化学过程,然而在伊西努卡硫池等环境中,其微生物基础仍知之甚少。我们使用高通量Illumina 16S rRNA测序和基于PICRUSt的功能推断,分析了沉积物和水样中的细菌多样性及代谢潜力。沉积物在缺氧条件下具有高硫化物/硫酸盐/硫代硫酸盐、盐度、碱度和有机质含量的特征,支持了多种硫还原菌和有机降解菌,主要来自变形菌门、厚壁菌门、拟杆菌门和放线菌门。相比之下,缺氧水柱中微生物群落的多样性较低,以α-、γ-和β-变形菌为主,包括[具体菌名缺失]和[具体菌名缺失]。硫氧化基因([具体基因缺失]、[具体基因缺失])在水中含量丰富,而硫酸盐还原基因([具体基因缺失]、[具体基因缺失]和[具体基因缺失])集中在沉积物中。核心微生物组分析确定[具体菌名缺失]、[具体菌名缺失]和[具体菌名缺失]为功能关键物种,整合了硫氧化和养分循环。沉积物中存在异化硫酸盐还原菌(未分类的脱硫杆菌科、[具体菌名缺失]、[具体菌名缺失]、[具体菌名缺失]和[具体菌名缺失]),而水样中富含硫氧化菌,如[具体菌名缺失]。代谢谱分析揭示了广泛的硫、氮和碳循环途径,硫自养反硝化和无氧光合作用将硫-氮和硫-碳循环耦合起来。这项研究为富硫环境中的微生物动态提供了关键的理论见解,突出了它们在生物地球化学循环中的作用以及在环境管理中的潜在应用。

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本文引用的文献

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Diversity and ecology of microbial sulfur metabolism.微生物硫代谢的多样性与生态学
Nat Rev Microbiol. 2025 Feb;23(2):122-140. doi: 10.1038/s41579-024-01104-3. Epub 2024 Oct 17.
2
Dynamics of drinking water biofilm formation associated with Legionella spp. colonization.饮用水生物膜形成与军团菌属定植相关的动力学。
NPJ Biofilms Microbiomes. 2024 Oct 6;10(1):101. doi: 10.1038/s41522-024-00573-x.
3
pH and thiosulfate dependent microbial sulfur oxidation strategies across diverse environments.不同环境中依赖pH值和硫代硫酸盐的微生物硫氧化策略
Front Microbiol. 2024 Jul 19;15:1426584. doi: 10.3389/fmicb.2024.1426584. eCollection 2024.
4
Metagenomics and Stable Isotopes Uncover the Augmented Sulfide-Driven Autotrophic Denitrification in a Seasonally Hypoxic, Sulfate-Abundant Reservoir.宏基因组学和稳定同位素揭示了季节性缺氧、硫酸盐丰富的水库中增强的硫化物驱动的自养反硝化作用。
Environ Sci Technol. 2024 Aug 13;58(32):14225-14236. doi: 10.1021/acs.est.4c00248. Epub 2024 Jul 31.
5
Persistent activity of aerobic methane-oxidizing bacteria in anoxic lake waters due to metabolic versatility.由于代谢多功能性,好氧甲烷氧化菌在缺氧湖水中持续活跃。
Nat Commun. 2024 Jun 21;15(1):5293. doi: 10.1038/s41467-024-49602-5.
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The Complete Genome of a Novel Typical Species and Analysis of Its Central Metabolic Pathways.一个新典型物种的全基因组及其中心代谢途径分析
Microorganisms. 2024 Feb 15;12(2):391. doi: 10.3390/microorganisms12020391.
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Sulfur-cycling chemolithoautotrophic microbial community dominates a cold, anoxic, hypersaline Arctic spring.硫循环化的化学自养微生物群落主导了寒冷、缺氧、高盐度的北极温泉。
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