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基于喹啉环设计具有潜在抗癌特性的新型多靶点抑制剂的计算机辅助方法

In Silico Approach to Design of New Multi-Targeted Inhibitors Based on Quinoline Ring with Potential Anticancer Properties.

作者信息

Czyżnikowska Żaneta, Mysłek Martyna, Marciniak Aleksandra, Płaczek Remigiusz, Kotynia Aleksandra, Krzyżak Edward

机构信息

Department of Basic Chemical Sciences, Faculty of Pharmacy, Wroclaw Medical University, Borowska 211, 50-556 Wroclaw, Poland.

"Biomolecule" Student Science Club, Department of Basic Chemical Sciences, Faculty of Pharmacy, Wroclaw Medical University, Borowska 211, 50-556 Wroclaw, Poland.

出版信息

Int J Mol Sci. 2025 May 12;26(10):4620. doi: 10.3390/ijms26104620.

Abstract

Searching for new anticancer drugs is a significant challenge for the medical community due to the current limitations of existing treatments. The primary objective of this study was to design and optimize multi-targeted drug candidates based on a quinoline scaffold. In this paper, we adopt various in silico techniques, including molecular docking, molecular dynamics simulations, and ADMET property modeling, to predict the binding affinity and interactions of 7-ethyl-10-hydroxycamptothecin derivatives with multiple biological targets. The interactions of these compounds with three potential molecular targets, topoisomerase I, bromodomain-containing protein 4, and ATP-binding cassette sub-family G member 2 proteins, were analyzed. It has been previously proved that the inhibition of these molecular targets may have beneficial effects on cancer treatment. The designed chemical compounds can effectively interact with selected proteins, thereby establishing their potential as drug candidates. Molecular docking revealed promising binding affinities, with topoisomerase I docking scores ranging from -9.0 to -10.3 kcal/mol, BRD4 scores from -6.6 to -8.0 kcal/mol, and ABCG2 scores from -8.0 to -10.0 kcal/mol. Furthermore, the ADMET property analysis indicates promising pharmacological profiles, protein binding affinity, selectivity, and bioavailability while minimizing toxicity. For example, satisfactory logP values have been demonstrated in the favorable range for bioavailability after oral administration. Additionally, several compounds exhibited predicted aqueous solubility values greater than -3, suggesting moderate-to-good solubility, which is crucial for oral drug delivery.

摘要

由于现有治疗方法目前存在局限性,寻找新型抗癌药物对医学界来说是一项重大挑战。本研究的主要目的是基于喹啉支架设计并优化多靶点候选药物。在本文中,我们采用了各种计算机模拟技术,包括分子对接、分子动力学模拟和ADMET性质建模,以预测7-乙基-10-羟基喜树碱衍生物与多个生物靶点的结合亲和力和相互作用。分析了这些化合物与三种潜在分子靶点(拓扑异构酶I、含溴结构域蛋白4和ATP结合盒亚家族G成员2蛋白)的相互作用。先前已经证明,抑制这些分子靶点可能对癌症治疗有有益效果。所设计的化合物能够有效地与选定的蛋白质相互作用,从而确立了它们作为候选药物的潜力。分子对接显示出有前景的结合亲和力,拓扑异构酶I的对接分数范围为-9.0至-10.3千卡/摩尔,BRD4分数为-6.6至-8.0千卡/摩尔,ABCG2分数为-8.0至-10.0千卡/摩尔。此外,ADMET性质分析表明其具有有前景的药理特性、蛋白质结合亲和力、选择性和生物利用度,同时将毒性降至最低。例如,口服给药后生物利用度的适宜范围内已显示出令人满意的logP值。此外,几种化合物的预测水溶性值大于-3,表明具有中度至良好的溶解度,这对于口服药物递送至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a65/12110963/137122208a6b/ijms-26-04620-g001.jpg

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