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[具体物种名称]中基因家族的特征分析、表达谱分析及功能预测

Characterization, Expression Profile Analysis, and Functional Prediction of Gene Family in .

作者信息

Li He, Wu Chongyang, Li Xiangyi, Xu Junlei, Cheng Zhanchao, Gao Jian

机构信息

Key Laboratory of National Forestry and Grassland Administration on Bamboo & Rattan Science and Technology, International Center for Bamboo and Rattan, Beijing 100102, China.

出版信息

Plants (Basel). 2025 May 14;14(10):1458. doi: 10.3390/plants14101458.

Abstract

UDP-glucose pyrophosphorylase (UGPase) is essential for carbohydrate metabolism, catalyzing UDP-glucose synthesis, a precursor for sucrose and cellulose biosynthesis. While genes have been widely studied in plants, their functions in remain unclear. This study identified and characterized the gene family using the whole genome and transcriptome data of , in conjunction with whole genome data from 10 additional species through sequence alignment, phylogenetic analysis, gene structure and motif exploration, protein structure prediction, and expression profiling. Phylogenetic analysis showed eight identified clustered with two in two clades. Gene structure, motif, and collinearity analyses indicate conservation with other bamboo . The gene family exhibited segmental duplications. Expression profiling revealed / were highly expressed in flowers, while others were enriched in shoots, buds, and culms. // were significantly downregulated during culm maturation. Protein structure prediction indicated two conformations with catalytic sites in disordered coil regions. WGCNA identified co-expression modules and protein interaction networks centered on /, while KEGG enrichment indicated their functions in metabolism, signal transduction, and stress adaptation. Promoter analysis identified cis-regulatory elements responsive to light, MeJA, and ABA. This study suggests that the evolutionarily conserved exhibit mutual coordination and dynamic expression during growth, providing fresh insights into their functional roles.

摘要

尿苷二磷酸葡萄糖焦磷酸化酶(UGPase)对碳水化合物代谢至关重要,催化尿苷二磷酸葡萄糖的合成,尿苷二磷酸葡萄糖是蔗糖和纤维素生物合成的前体。虽然该基因在植物中已得到广泛研究,但其在[具体物种名称未给出]中的功能仍不清楚。本研究利用[具体物种名称未给出]的全基因组和转录组数据,结合另外10个物种的全基因组数据,通过序列比对、系统发育分析、基因结构和基序探索、蛋白质结构预测以及表达谱分析,对[具体基因名称未给出]基因家族进行了鉴定和特征分析。系统发育分析表明,鉴定出的8个[具体基因名称未给出]与两个[具体基因名称未给出]聚集在两个进化枝中。基因结构、基序和共线性分析表明与其他竹子的[具体基因名称未给出]具有保守性。该基因家族表现出片段重复。表达谱分析显示,[具体基因名称未给出]/[具体基因名称未给出]在花中高度表达,而其他基因在茎、芽和竹秆中富集。[具体基因名称未给出]//在竹秆成熟过程中显著下调。蛋白质结构预测表明有两种构象,催化位点位于无序卷曲区域。加权基因共表达网络分析(WGCNA)确定了以[具体基因名称未给出]/[具体基因名称未给出]为中心的共表达模块和蛋白质相互作用网络,而京都基因与基因组百科全书(KEGG)富集分析表明它们在代谢、信号转导和胁迫适应方面的功能。启动子分析确定了对光、茉莉酸甲酯(MeJA)和脱落酸(ABA)有响应的顺式调控元件。本研究表明,进化上保守的[具体基因名称未给出]在[具体物种名称未给出]生长过程中表现出相互协调和动态表达,为其功能作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12b/12115279/aefabee8f1ac/plants-14-01458-g001.jpg

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