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甘肃桑斑锦天牛(鞘翅目:天牛科)的染色体水平基因组组装

Chromosome-level genome assembly of Sambus kanssuensis (Coleoptera: Buprestidae).

作者信息

Wei Zhonghua, Li Yunchun, Li Yingying, Liu Jiuzhou, Ding Shuangmei, Chen Xulong, Shi Aimin, Yang Ding

机构信息

College of Life Sciences, China West Normal University, Nanchong, 637009, China.

State Key Laboratory of Green Pesticides, Guizhou University, Guiyang, Guizhou, 550025, China.

出版信息

Sci Data. 2025 May 28;12(1):895. doi: 10.1038/s41597-025-05271-7.

DOI:10.1038/s41597-025-05271-7
PMID:40436974
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12119912/
Abstract

Sambus kanssuensis Ganglbauer, 1890 (Coleoptera: Buprestidae), distributed in Gansu and Sichuan Provinces of China, is a phytophagous pest that feeds on the toxic plant Buddleja. However, the genomic resources of this beetle remain unknown, which impedes the understanding of its ecological adaptations. Consequently, this study presents a complete, well-assembled, and annotated genome of S. kanssuensis. The assembled results indicate a genome size of 312.42 Mb, comprising 206 scaffolds, with an N50 of 34.04 Mb; 98.68% of the assembly sequences were anchored to 11 chromosomes, including one sex chromosome. The genome contains 12,723 protein-coding genes, of which 11,977 have been annotated. BUSCO analysis revealed that the completeness of the chromosome-level genome is 97.9%. This chromosome-level genome provides valuable data for further investigations into detoxification mechanisms, ecological adaptations, population genetics, and the evolution of Buprestidae.

摘要

甘肃桑天牛(Sambus kanssuensis Ganglbauer,1890年)(鞘翅目:天牛科)分布于中国甘肃省和四川省,是一种以有毒植物醉鱼草为食的植食性害虫。然而,这种甲虫的基因组资源尚不清楚,这阻碍了对其生态适应性的了解。因此,本研究展示了甘肃桑天牛完整、组装良好且经过注释的基因组。组装结果表明,基因组大小为312.42 Mb,由206个支架组成,N50为34.04 Mb;98.68%的组装序列被锚定到11条染色体上,包括一条性染色体。该基因组包含12723个蛋白质编码基因,其中11977个已被注释。BUSCO分析显示,染色体水平基因组的完整性为97.9%。这个染色体水平的基因组为进一步研究解毒机制、生态适应性、群体遗传学和天牛科的进化提供了有价值的数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164c/12119912/3593a105e332/41597_2025_5271_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164c/12119912/8d28d3d0ee3b/41597_2025_5271_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164c/12119912/915920afcf57/41597_2025_5271_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164c/12119912/3593a105e332/41597_2025_5271_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164c/12119912/8d28d3d0ee3b/41597_2025_5271_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164c/12119912/915920afcf57/41597_2025_5271_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164c/12119912/3593a105e332/41597_2025_5271_Fig3_HTML.jpg

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Genes (Basel). 2024 Oct 17;15(10):1336. doi: 10.3390/genes15101336.
2
The genome sequence of a jewel beetle, (Fabricius, 1776).一种吉丁虫(法布里丘斯,1776年)的基因组序列。
Wellcome Open Res. 2024 Jul 26;9:413. doi: 10.12688/wellcomeopenres.22762.1. eCollection 2024.
3
An integrative strategy used by the aphid Uroleucon formosanum to counter host sesquiterpene lactone defense: Insights from combined genomic and transcriptomic analysis.
台湾长管蚜对抗寄主倍半萜内酯防御的综合策略:基于基因组和转录组联合分析的见解
Insect Sci. 2024 Sep 30. doi: 10.1111/1744-7917.13452.
4
The genome sequence of a metallic wood-boring beetle, (Ratzeburg, 1837).一种蛀木甲虫(Ratzeburg,1837年)的基因组序列。
Wellcome Open Res. 2024 Oct 17;9:46. doi: 10.12688/wellcomeopenres.20877.1. eCollection 2024.
5
Mitogenomic analysis and phylogenetic relationships of Agrilinae: Insights into the evolutionary patterns of a diverse buprestid subfamily.基于线粒体基因组的分析与 Agrilinae 科的系统发育关系:探究多样化的叩头甲亚科的进化模式。
PLoS One. 2023 Sep 28;18(9):e0291820. doi: 10.1371/journal.pone.0291820. eCollection 2023.
6
Spatial metabolomics reveal divergent cardenolide processing in the monarch (Danaus plexippus) and the common crow butterfly (Euploea core).空间代谢组学揭示了帝王蝶(Danaus plexippus)和普通乌鸦蝶(Euploea core)中不同的强心甾内酯代谢途径。
Mol Ecol Resour. 2023 Aug;23(6):1195-1210. doi: 10.1111/1755-0998.13786. Epub 2023 Mar 31.
7
Protein-to-genome alignment with miniprot.用 Miniprot 进行蛋白质到基因组的比对。
Bioinformatics. 2023 Jan 1;39(1). doi: 10.1093/bioinformatics/btad014.
8
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.BUSCO 更新:用于真核生物、原核生物和病毒基因组评分的新颖且简化的工作流程以及更广泛和更深的系统发育覆盖范围。
Mol Biol Evol. 2021 Sep 27;38(10):4647-4654. doi: 10.1093/molbev/msab199.
9
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.使用带有 hifiasm 的相定装配图进行单体型解析从头组装。
Nat Methods. 2021 Feb;18(2):170-175. doi: 10.1038/s41592-020-01056-5. Epub 2021 Feb 1.
10
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.Rfam 14:扩展了对宏基因组、病毒和 miRNA 家族的覆盖范围。
Nucleic Acids Res. 2021 Jan 8;49(D1):D192-D200. doi: 10.1093/nar/gkaa1047.