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基于线粒体基因组的分析与 Agrilinae 科的系统发育关系:探究多样化的叩头甲亚科的进化模式。

Mitogenomic analysis and phylogenetic relationships of Agrilinae: Insights into the evolutionary patterns of a diverse buprestid subfamily.

机构信息

College of Life Sciences, China West Normal University, Nanchong, Sichuan, China.

Mental Health Center of Nanchong, Nanchong, Sichuan, China.

出版信息

PLoS One. 2023 Sep 28;18(9):e0291820. doi: 10.1371/journal.pone.0291820. eCollection 2023.

DOI:10.1371/journal.pone.0291820
PMID:37768983
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10538768/
Abstract

Agrilinae is the largest subfamily in Buprestidae, which includes the four tribes, namely Coraebini, Agrilini, Aphanisticini, and Tracheini. However, there is a need to verify the evolutionary relationships among the taxa in Buprestidae. Thus, to explore the phylogenetic position of Aphanisticini, the mitochondrial genomes of Endelus continentalis and Cantonius szechuanensis were sequenced using next-generation sequencing technology. Three other mitogenomes of agriline beetles, Agrilus discalis, Sambus kanssuensis, and Habroloma sp., were also sequenced for the phylogenetic analyses. The divergence time of Buprestidae was estimated based on the mitogenomes. The general features of the known mitogenomes of Agrilinae were compared, analyzed, and summarized. Out of these five species, S. kanssuensis had the shortest mitogenome length (15,411), while Habroloma sp. had the longest (16,273). The gene arrangement of the five new sequences was identical to that of the reported buprestid mitogenomes. The Ka/Ks ratios of Meliboeus (0.79) and Endelus (0.78) were significantly larger than those of the other agriline genera. The results of the phylogeny indicated that Aphanisticini was more closely related to Tracheini and that the genus Sambus separated from the base of the Agrilinae clade at about 130 Ma. Moreover, Aphanisticini and Tracheini diverged at around 26 Ma.

摘要

锯角叶甲亚科是丽金龟科中最大的亚科,包括四个族,即沟胫叶甲族、锯角叶甲族、扁叶甲族和筒胸叶甲族。然而,需要验证丽金龟科中各分类单元的进化关系。因此,为了探索扁叶甲族的系统发育位置,本研究采用下一代测序技术对宽缘沟胫叶甲和四川川扁叶甲的线粒体基因组进行了测序。同时,还对另外三种锯角叶甲的线粒体基因组进行了测序,分别是梨星毛虫、桑天牛和斑腿实蝇,用于系统发育分析。基于线粒体基因组,估计了丽金龟科的分歧时间。比较、分析和总结了已知锯角叶甲线粒体基因组的一般特征。在这 5 个物种中,S. kanssuensis 的线粒体基因组最短(15411bp),而斑腿实蝇的最长(16273bp)。这 5 个新序列的基因排列与已报道的丽金龟线粒体基因组相同。Meliboeus(0.79)和Endelus(0.78)的 Ka/Ks 比值明显大于其他锯角叶甲属的比值。系统发育结果表明,扁叶甲族与筒胸叶甲族关系较近,桑天牛属与锯角叶甲族的亲缘关系最早在约 1.30 亿年前就已分离。此外,扁叶甲族和筒胸叶甲族在约 2600 万年前分化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/4764b30ae7fb/pone.0291820.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/93f78b72d185/pone.0291820.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/fc94b0b91db6/pone.0291820.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/eceab912745b/pone.0291820.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/75fe691abab6/pone.0291820.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/4764b30ae7fb/pone.0291820.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/93f78b72d185/pone.0291820.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/fc94b0b91db6/pone.0291820.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/eceab912745b/pone.0291820.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/75fe691abab6/pone.0291820.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa88/10538768/4764b30ae7fb/pone.0291820.g005.jpg

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