• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

水生共生基因组计划:探索生命之树中共生关系的进化

The Aquatic Symbiosis Genomics Project: probing the evolution of symbiosis across the Tree of Life.

作者信息

McKenna Victoria, Archibald John M, Beinart Roxanne, Dawson Michael N, Hentschel Ute, Keeling Patrick J, Lopez Jose V, Martín-Durán José M, Petersen Jillian M, Sigwart Julia D, Simakov Oleg, Sutherland Kelly R, Sweet Michael, Talbot Nicholas J, Thompson Anne W, Bender Sara, Harrison Peter W, Rajan Jeena, Cochrane Guy, Berriman Matthew, Lawniczak Mara K N, Blaxter Mark

机构信息

Tree of Life, Wellcome Sanger Institute, Cambridge, CB10 1SA, UK.

Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.

出版信息

Wellcome Open Res. 2024 Jun 10;6:254. doi: 10.12688/wellcomeopenres.17222.2. eCollection 2021.

DOI:10.12688/wellcomeopenres.17222.2
PMID:40438199
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12117321/
Abstract

We present the Aquatic Symbiosis Genomics Project, a global collaboration to generate high quality genome sequences for a wide range of eukaryotes and their microbial symbionts. Launched under the Symbiosis in Aquatic Systems Initiative of the Gordon and Betty Moore Foundation, the ASG Project brings together researchers from across the globe who hope to use these reference genomes to augment and extend their analyses of the dynamics, mechanisms and environmental importance of symbioses. Applying large-scale, high-throughput sequencing and assembly technologies, the ASG collaboration will assemble and annotate the genomes of 500 symbiotic organisms - both the "hosts" and the microbial symbionts with which they associate. These data will be released openly to benefit all who work on symbioses, from conservation geneticists to those interested in the origin of the eukaryotic cell.

摘要

我们推出了水生共生基因组计划,这是一项全球合作项目,旨在为广泛的真核生物及其微生物共生体生成高质量的基因组序列。该计划在戈登与贝蒂·摩尔基金会的水生系统共生倡议下启动,汇聚了全球各地的研究人员,他们希望利用这些参考基因组来加强和扩展对共生关系的动态、机制及环境重要性的分析。通过应用大规模、高通量测序和组装技术,水生共生基因组计划合作团队将组装和注释500种共生生物的基因组——包括“宿主”及其相关的微生物共生体。这些数据将公开发布,以使所有从事共生关系研究的人员受益,从保护遗传学家到对真核细胞起源感兴趣的人员。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c01d/12117324/f648fdfafe2e/wellcomeopenres-6-24685-g0000.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c01d/12117324/f648fdfafe2e/wellcomeopenres-6-24685-g0000.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c01d/12117324/f648fdfafe2e/wellcomeopenres-6-24685-g0000.jpg

相似文献

1
The Aquatic Symbiosis Genomics Project: probing the evolution of symbiosis across the Tree of Life.水生共生基因组计划:探索生命之树中共生关系的进化
Wellcome Open Res. 2024 Jun 10;6:254. doi: 10.12688/wellcomeopenres.17222.2. eCollection 2021.
2
Launching the Tree of Life Gateway.启动生命之树网关。
Wellcome Open Res. 2021 May 21;6:125. doi: 10.12688/wellcomeopenres.16913.1. eCollection 2021.
3
Pangenome Evolution Reconciles Robustness and Instability of Rhizobial Symbiosis.泛基因组进化协调了根瘤菌共生的稳健性和不稳定性。
mBio. 2022 Jun 28;13(3):e0007422. doi: 10.1128/mbio.00074-22. Epub 2022 Apr 13.
4
Symbiont genomics, our new tangled bank.共生体基因组学,我们新的错综复杂的生命之网。
Genomics. 2010 Mar;95(3):129-37. doi: 10.1016/j.ygeno.2009.12.004. Epub 2010 Jan 4.
5
Pan-genome insights into adaptive evolution of bacterial symbionts in mixed host-microbe symbioses represented by human gut microbiota Bacteroides cellulosilyticus.泛基因组视角下混合宿主-微生物共生体中细菌共生体适应性进化的研究——以人类肠道微生物群 Bacteroides cellulosilyticus 为例。
Sci Total Environ. 2024 Jun 1;927:172251. doi: 10.1016/j.scitotenv.2024.172251. Epub 2024 Apr 9.
6
Comparative genomics analyses of Actinobacteriota identify Golgi phosphoprotein 3 (GPP34) as a widespread ancient protein family associated with sponge symbiosis.放线菌门的比较基因组学分析确定高尔基磷蛋白3(GPP34)是一个与海绵共生相关的广泛存在的古老蛋白质家族。
Microbiome. 2025 Jan 7;13(1):4. doi: 10.1186/s40168-024-01963-1.
7
Using Colonization Assays and Comparative Genomics To Discover Symbiosis Behaviors and Factors in Vibrio fischeri.利用定殖实验和比较基因组学发现费氏弧菌的共生行为和因子。
mBio. 2020 Mar 3;11(2):e03407-19. doi: 10.1128/mBio.03407-19.
8
Bacterial and archaeal symbioses with protists.细菌和古菌与原生生物的共生关系。
Curr Biol. 2021 Jul 12;31(13):R862-R877. doi: 10.1016/j.cub.2021.05.049.
9
10
Prevalence of an Insect-Associated Genomic Region in Environmentally Acquired Symbionts.环境获得共生体中与昆虫相关的基因组区域的流行率。
Appl Environ Microbiol. 2022 May 10;88(9):e0250221. doi: 10.1128/aem.02502-21. Epub 2022 Apr 18.

引用本文的文献

1
Animal-chlorophyte photosymbioses: evolutionary origins and ecological diversity.动物与绿藻的光合共生关系:进化起源与生态多样性
Biol Lett. 2025 Jul;21(7):20250250. doi: 10.1098/rsbl.2025.0250. Epub 2025 Jul 30.
2
Cell type-specific immune regulation under symbiosis in a facultatively symbiotic coral.兼性共生珊瑚中共生状态下的细胞类型特异性免疫调节
ISME J. 2025 Jan 2;19(1). doi: 10.1093/ismejo/wraf132.
3
Physiology and metabolism of eukaryotic microalgae involved in aquatic photosymbioses.参与水生光合共生的真核微藻的生理学与代谢

本文引用的文献

1
The Evolution, Assembly, and Dynamics of Marine Holobionts.海洋后生动物的进化、组装和动态。
Ann Rev Mar Sci. 2024 Jan 17;16:443-466. doi: 10.1146/annurev-marine-022123-104345. Epub 2023 Aug 8.
2
Launching the Tree of Life Gateway.启动生命之树网关。
Wellcome Open Res. 2021 May 21;6:125. doi: 10.12688/wellcomeopenres.16913.1. eCollection 2021.
3
Significantly improving the quality of genome assemblies through curation.通过编辑显著提高基因组组装的质量。
New Phytol. 2025 Jul;247(1):71-89. doi: 10.1111/nph.70190. Epub 2025 May 19.
4
First reference genomes for two mesophotic, reef-building coral species: Leptoseris cf. scabra and Montipora cf. grisea.两种中光层造礁珊瑚物种的首个参考基因组:细纹鹿角珊瑚近似种(Leptoseris cf. scabra)和灰蒙鹿角珊瑚近似种(Montipora cf. grisea) 。
J Hered. 2025 Jul 21;116(4):488-498. doi: 10.1093/jhered/esaf010.
5
Myxozoan parasite genomes assembled from contaminated host data reveal extensive gene order conservation and rapid sequence evolution.从受污染的宿主数据中组装的粘孢子虫寄生虫基因组揭示了广泛的基因顺序保守性和快速的序列进化。
G3 (Bethesda). 2025 Jul 9;15(7). doi: 10.1093/g3journal/jkaf061.
6
Genomes of the Caribbean reef-building corals , and .加勒比造礁珊瑚的基因组,以及。 (你提供的原文似乎不完整,请检查一下,以便能更准确地翻译完整内容。)
bioRxiv. 2024 Aug 22:2024.08.21.608299. doi: 10.1101/2024.08.21.608299.
Gigascience. 2021 Jan 9;10(1). doi: 10.1093/gigascience/giaa153.
4
The European Nucleotide Archive in 2020.2020 年的欧洲核苷酸档案库。
Nucleic Acids Res. 2021 Jan 8;49(D1):D82-D85. doi: 10.1093/nar/gkaa1028.
5
BlobToolKit - Interactive Quality Assessment of Genome Assemblies.BlobToolKit - 基因组组装的交互式质量评估。
G3 (Bethesda). 2020 Apr 9;10(4):1361-1374. doi: 10.1534/g3.119.400908.
6
Acoustic enrichment can enhance fish community development on degraded coral reef habitat.声强化可以促进退化珊瑚礁生境中鱼类群落的发展。
Nat Commun. 2019 Nov 29;10(1):5414. doi: 10.1038/s41467-019-13186-2.
7
Evidence That Inconsistent Gene Prediction Can Mislead Analysis of Dinoflagellate Genomes.证据表明,不一致的基因预测可能会误导对甲藻基因组的分析。
J Phycol. 2020 Feb;56(1):6-10. doi: 10.1111/jpy.12947.
8
Cell Biology of Coral Symbiosis: Foundational Study Can Inform Solutions to the Coral Reef Crisis.珊瑚共生的细胞生物学:基础研究可为解决珊瑚礁危机提供信息。
Integr Comp Biol. 2019 Oct 1;59(4):845-855. doi: 10.1093/icb/icz067.
9
Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts.系统修订共生藻科突出珊瑚共生体的古老性和多样性。
Curr Biol. 2018 Aug 20;28(16):2570-2580.e6. doi: 10.1016/j.cub.2018.07.008. Epub 2018 Aug 9.
10
Earth BioGenome Project: Sequencing life for the future of life.地球生物基因组计划:为生命的未来测序生命。
Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4325-4333. doi: 10.1073/pnas.1720115115.