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通过基于小瓶的简单一步预处理和单细胞蛋白质组学实现的卵母细胞衰老深度剖析

Deep Profiling of Oocyte Aging Enabled by Simple One-Step Vial-Based Pretreatment and Single-Cell Proteomics.

作者信息

Zhang Hui, Zhang Hailu, Huang Chuanxi, Zeng Qing, Tian Chunyan, Yang Jing, He Fuchu, Yang Yun

机构信息

Department of Chemistry, College of Science, Southern University of Science and Technology, Shenzhen 518055, China.

International Academy of Phronesis Medicine (Guang Dong), Guangzhou 510000, China.

出版信息

JACS Au. 2025 May 1;5(5):2321-2333. doi: 10.1021/jacsau.5c00244. eCollection 2025 May 26.

Abstract

Single-cell proteomics is a pivotal technology for studying cellular phenotypes, offering unparalleled insights into cellular heterogeneity and dynamic functions. Technical improvement in mass spectrometry instruments and sample preparation has made proteomics profiling of single mouse oocytes or early embryos feasible in recent years. Yet, developing a simple and robust sample preparation method to enable deep proteomics profiling of single germline cells remains a significant challenge. Herein, we developed a simple one-step vial-based pretreatment (SOViP) for deep label-free single-cell proteomics of germline cells. SOViP integrates all sample preparation procedures into a single step in autosampler vials, yet it is highly efficient and high-throughput in comparison to reported multistep methods. SOViP can be finished within ∼2 h with hands-on time limited to merely a few minutes. On average, over 6500 protein groups can be quantified from a single mouse oocyte using SOViP. In total, 6983 protein groups were identified from single mouse oocytes across an entire reproductive lifespan, offering a valuable proteomics resource for oocyte aging. Unique molecular characteristics of oocytes at different ages were revealed, and a classifier consisting of ten proteins demonstrated accurate age-group classification and fertility-level prediction. Although demonstrated using mouse oocytes in this study, SOViP is adaptable to rare cell samples and other large cells including follicles and preimplantation embryo cells, among others.

摘要

单细胞蛋白质组学是研究细胞表型的关键技术,能为细胞异质性和动态功能提供无与伦比的见解。近年来,质谱仪器和样品制备技术的改进使得对单个小鼠卵母细胞或早期胚胎进行蛋白质组分析成为可能。然而,开发一种简单且可靠的样品制备方法以实现对单个生殖细胞进行深度蛋白质组分析仍然是一项重大挑战。在此,我们开发了一种基于小瓶的简单一步预处理法(SOViP),用于生殖细胞的深度无标记单细胞蛋白质组学研究。SOViP将所有样品制备程序整合到自动进样器小瓶中的一个步骤中,但与已报道的多步骤方法相比,它具有高效和高通量的特点。SOViP可以在约2小时内完成,实际操作时间仅需几分钟。使用SOViP平均可从单个小鼠卵母细胞中定量分析超过6500个蛋白质组。总共从整个生殖寿命期的单个小鼠卵母细胞中鉴定出6983个蛋白质组,为卵母细胞衰老提供了宝贵的蛋白质组学资源。揭示了不同年龄卵母细胞的独特分子特征,由十种蛋白质组成的分类器显示出准确的年龄组分类和生育水平预测能力。尽管本研究中使用小鼠卵母细胞进行了验证,但SOViP适用于稀有细胞样品以及其他大细胞,包括卵泡和植入前胚胎细胞等。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bd8/12117414/0c10dc66f199/au5c00244_0001.jpg

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