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通过镍模型系统视角看乙酰辅酶A合成酶的机制。

The mechanism of acetyl-CoA synthase through the lens of a nickel model system.

作者信息

Nath Shounak, Griego Leonel, Mirica Liviu M

机构信息

Department of Chemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA.

出版信息

Nat Commun. 2025 Jun 4;16(1):5177. doi: 10.1038/s41467-025-60163-z.

DOI:10.1038/s41467-025-60163-z
PMID:40467565
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12137549/
Abstract

Given the urgent need to develop new methods of CO/CO utilization, understanding the mechanism of acetyl-CoA synthase (ACS)-a primordial nickel-containing enzyme that converts these gases into a source of cellular energy-is crucial; however, conflicting hypotheses and a dearth of well-characterized bioorganometallic intermediates have hindered a proper understanding of its mechanism. Herein, we report a functional model system that supports several organometallic intermediates proposed for ACS, including the long sought-after Ni(methyl)(CO) species, and promotes all key reaction steps during catalysis: methylation, carbonylation, and thiolysis. Our investigations provide the following key mechanistic insights that are directly relevant to ACS: (i) the binding of a second CO molecule to the Ni center promotes migratory insertion, (ii) both paramagnetic and diamagnetic Ni intermediates are involved, (iii) one-electron oxidation of the Ni(acetyl)(thiolate) species drives a fast reductive elimination, and (iv) a random binding order of the methyl and CO groups to the Ni center is feasible.

摘要

鉴于开发一氧化碳(CO)/一氧化碳利用新方法的迫切需求,了解乙酰辅酶A合成酶(ACS)的机制至关重要,ACS是一种原始的含镍酶,可将这些气体转化为细胞能量来源;然而,相互矛盾的假设以及缺乏充分表征的生物有机金属中间体阻碍了对其机制的正确理解。在此,我们报告了一个功能模型系统,该系统支持为ACS提出的几种有机金属中间体,包括长期以来寻找的Ni(甲基)(CO)物种,并促进催化过程中的所有关键反应步骤:甲基化、羰基化和硫解。我们的研究提供了以下与ACS直接相关的关键机制见解:(i)第二个CO分子与Ni中心的结合促进迁移插入,(ii)顺磁性和抗磁性Ni中间体均参与其中,(iii)Ni(乙酰基)(硫醇盐)物种的单电子氧化驱动快速还原消除,以及(iv)甲基和CO基团与Ni中心的随机结合顺序是可行的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/68bd1c7814d8/41467_2025_60163_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/696dd1dc7e05/41467_2025_60163_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/9ac329d6cc1d/41467_2025_60163_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/fd41fb3647b4/41467_2025_60163_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/68bd1c7814d8/41467_2025_60163_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/696dd1dc7e05/41467_2025_60163_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/9ac329d6cc1d/41467_2025_60163_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/fd41fb3647b4/41467_2025_60163_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e8e/12137549/68bd1c7814d8/41467_2025_60163_Fig4_HTML.jpg

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本文引用的文献

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J Am Chem Soc. 2024 Jul 31;146(30):21034-21043. doi: 10.1021/jacs.4c06241. Epub 2024 Jul 18.
2
An alcove at the acetyl-CoA synthase nickel active site is required for productive substrate CO binding and anaerobic carbon fixation.乙酰辅酶 A 合酶镍活性位点的壁龛对于产性底物 CO 结合和厌氧碳固定是必需的。
J Biol Chem. 2024 Aug;300(8):107503. doi: 10.1016/j.jbc.2024.107503. Epub 2024 Jun 27.
3
Nickel-catalyzed ester carbonylation promoted by imidazole-derived carbenes and salts.
咪唑衍生卡宾和盐促进的镍催化酯羰基化反应
Science. 2023 Nov 17;382(6672):815-820. doi: 10.1126/science.ade3179. Epub 2023 Nov 16.
4
Characterization of Methyl- and Acetyl-Ni Intermediates in Acetyl CoA Synthase Formed during Anaerobic CO and CO Fixation.在厌氧 CO 和 CO2 固定过程中形成的乙酰辅酶 A 合酶中甲基和乙酰镍中间体的特性。
J Am Chem Soc. 2023 Jun 28;145(25):13696-13708. doi: 10.1021/jacs.3c01772. Epub 2023 Jun 12.
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The two-electron reduced A cluster in acetyl-CoA synthase: Preparation, characteristics and mechanistic implications.乙酰辅酶A合酶中双电子还原的A簇:制备、特性及机制意义
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