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具有近期全基因组复制的淡水蜗牛模型系统中核基因组大小的变异

Variation in nuclear genome size in a freshwater snail model system featuring a recent whole-genome duplication.

作者信息

Neiman Maurine, Pichler Maria, Haase Martin, Lamatsch Dunja K

机构信息

Department of Biology, University of Iowa, Iowa City, IA, USA.

Research Institute of Limnology, University of Innsbruck, Mondsee, Austria.

出版信息

R Soc Open Sci. 2025 Jun 4;12(6):250171. doi: 10.1098/rsos.250171. eCollection 2025 Jun.

Abstract

Conspecifics often share-or are assumed to share-nuclear genome characteristics like nucleotide composition and genome size. These fundamental aspects of the nuclear genome can themselves be the object of natural selection. We here provide the first high-quality direct measurements of nuclear genome DNA content in a representative diverse sample of , an Aotearoa New Zealand freshwater snail that is a textbook example of the maintenance of sexual reproduction in nature and is invasive worldwide. We used propidium-iodide-based flow cytometry to characterize nuclear DNA content and its variation in nearly 100 from multiple populations representing both sexual and asexual individuals. We also estimated nuclear DNA content in multiple , a closely related obligately sexual species. These data confirmed and extended earlier lines of evidence for polyploidy and variable genome size within asexual and provided the first direct demonstration of distinctly higher nuclear genome content in diploid (sexual) relative to diploid sexual . Together, these results are consistent with genomic evidence for a recent whole-genome duplication (WGD) and subsequent and in-process rediploidization in , setting the stage for use of as a model for WGD and its consequences.

摘要

同种生物通常共享——或者被认为共享——诸如核苷酸组成和基因组大小等核基因组特征。核基因组的这些基本方面本身可以成为自然选择的对象。我们在此首次对一种新西兰淡水蜗牛的代表性多样样本中的核基因组DNA含量进行了高质量的直接测量,这种蜗牛是自然界有性生殖维持的典型例子,并且在全球范围内具有入侵性。我们使用基于碘化丙啶的流式细胞术来表征近100个来自代表有性和无性个体的多个种群的核DNA含量及其变异。我们还估计了多个密切相关的专性有性物种的核DNA含量。这些数据证实并扩展了早期关于无性蜗牛内多倍体和可变基因组大小的证据,并首次直接证明二倍体(有性)蜗牛相对于二倍体有性近缘物种具有明显更高的核基因组含量。总之,这些结果与近期全基因组复制(WGD)以及随后和正在进行的重新二倍体化的基因组证据一致,为将蜗牛用作WGD及其后果的模型奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5aa9/12133333/e92ecccdba80/rsos.250171.f001.jpg

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