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利用阴道炎症和微生物群:一种预测体外受精成功率的机器学习模型。

Harnessing vaginal inflammation and microbiome: a machine learning model for predicting IVF success.

作者信息

Bar Ofri, Vagios Stylianos, Barkai Omer, Elshirbini Joseph, Souter Irene, Xu Jiawu, James Kaitlyn, Bormann Charles, Mitsunami Makiko, Chavarro Jorge E, Foessleitner Philipp, Kwon Douglas S, Yassour Moran, Mitchell Caroline

机构信息

Department of Obstetrics and Gynecology, Massachusetts General Hospital, Boston, MA, USA.

Department of Microbiology and Molecular Genetics, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.

出版信息

NPJ Biofilms Microbiomes. 2025 Jun 5;11(1):95. doi: 10.1038/s41522-025-00732-8.

DOI:10.1038/s41522-025-00732-8
PMID:40473637
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12141462/
Abstract

Humans are the only species with a commensal Lactobacillus-dominant vaginal microbiota. Reproductive tract microbes have been linked to fertility outcomes, as has intrauterine inflammation, suggesting immune response may mediate adverse outcomes. In this pilot study, we compared vaginal microbiota composition and immune marker concentrations between patients with unexplained or male factor infertility (MFI), as a control. We applied a supervised machine learning algorithm that integrated microbiome and inflammation data to predict pregnancy outcomes.Twenty-eight participants provided vaginal swabs at three IVF cycle time points; 18 achieved pregnancy. Pregnant participants had lower microbial diversity and inflammation. Among them, MFI cases had higher diversity but lower inflammation than those with unexplained infertility. Our model showed the highest prediction accuracy at time point 2 of the IVF cycle. These findings suggest that vaginal microbiota and inflammation jointly impact fertility and can inform predictive tools in reproductive medicine.

摘要

人类是唯一拥有以共生乳酸杆菌为主导的阴道微生物群的物种。生殖道微生物与生育结果有关,子宫内炎症也是如此,这表明免疫反应可能介导不良后果。在这项初步研究中,我们比较了不明原因或男性因素不育(MFI)患者(作为对照)之间的阴道微生物群组成和免疫标志物浓度。我们应用了一种监督式机器学习算法,该算法整合了微生物组和炎症数据来预测妊娠结局。28名参与者在三个体外受精周期时间点提供了阴道拭子;18人成功怀孕。怀孕的参与者微生物多样性和炎症水平较低。其中,MFI病例比不明原因不孕的病例具有更高的多样性但更低的炎症水平。我们的模型在体外受精周期的时间点2显示出最高的预测准确性。这些发现表明,阴道微生物群和炎症共同影响生育能力,并可为生殖医学中的预测工具提供信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/0540aacbcc0c/41522_2025_732_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/33f60d9dc3ba/41522_2025_732_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/3a3ba99a363d/41522_2025_732_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/d68b6ea8bbf7/41522_2025_732_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/0540aacbcc0c/41522_2025_732_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/33f60d9dc3ba/41522_2025_732_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/3a3ba99a363d/41522_2025_732_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/d68b6ea8bbf7/41522_2025_732_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e2/12141462/0540aacbcc0c/41522_2025_732_Fig4_HTML.jpg

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本文引用的文献

1
New Immunological Indexes for the Effect of Systemic Inflammation on Oocyte and Embryo Development in Women With Unexplained Infertility: Systemic Immune Response Index and Pan-Immune-Inflammation Value.新的免疫指标:全身性炎症对不明原因不孕妇女卵母细胞和胚胎发育的影响:全身免疫反应指数和全免疫炎症值。
Am J Reprod Immunol. 2024 Sep;92(3):e13923. doi: 10.1111/aji.13923.
2
Dysbiotic Vaginal Microbiota Induces Preterm Birth Cascade via Pathogenic Molecules in the Vagina.阴道微生物群失调通过阴道中的致病分子引发早产连锁反应。
Metabolites. 2024 Jan 11;14(1):45. doi: 10.3390/metabo14010045.
3
Semen microbiota are dramatically altered in men with abnormal sperm parameters.
精液微生物群在精子参数异常的男性中发生显著改变。
Sci Rep. 2024 Jan 11;14(1):1068. doi: 10.1038/s41598-024-51686-4.
4
Machine learning and deep learning applications in microbiome research.机器学习与深度学习在微生物组研究中的应用。
ISME Commun. 2022 Oct 6;2(1):98. doi: 10.1038/s43705-022-00182-9.
5
Metagenomics Reveals Specific Microbial Features in Males with Semen Alterations.宏基因组学揭示了精液改变男性的特定微生物特征。
Genes (Basel). 2023 Jun 6;14(6):1228. doi: 10.3390/genes14061228.
6
Seminal Microbiota of Idiopathic Infertile Patients and Its Relationship With Sperm DNA Integrity.特发性不育患者的精液微生物群及其与精子DNA完整性的关系。
Front Cell Dev Biol. 2022 Jun 28;10:937157. doi: 10.3389/fcell.2022.937157. eCollection 2022.
7
Endometrial Dysbiosis Is Related to Inflammatory Factors in Women with Repeated Implantation Failure: A Pilot Study.子宫内膜生态失调与反复种植失败女性的炎症因子相关:一项初步研究。
J Clin Med. 2022 Apr 28;11(9):2481. doi: 10.3390/jcm11092481.
8
Cysteine dependence of Lactobacillus iners is a potential therapeutic target for vaginal microbiota modulation.乳杆菌属的半胱氨酸依赖性是阴道微生物组调节的一个潜在治疗靶点。
Nat Microbiol. 2022 Mar;7(3):434-450. doi: 10.1038/s41564-022-01070-7. Epub 2022 Mar 3.
9
Endometrial microbiota composition is associated with reproductive outcome in infertile patients.子宫内膜微生物组的组成与不孕患者的生殖结局有关。
Microbiome. 2022 Jan 4;10(1):1. doi: 10.1186/s40168-021-01184-w.
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Explanation of machine learning models using shapley additive explanation and application for real data in hospital.使用 Shapley 加法解释对机器学习模型进行解释,并将其应用于医院的真实数据。
Comput Methods Programs Biomed. 2022 Feb;214:106584. doi: 10.1016/j.cmpb.2021.106584. Epub 2021 Dec 10.