Rohan Paulo, Cruz Dos Santos Everton, Azevedo Pedro Leite, Oliveira da Conceição Jessica, Abdelhay Eliana, Binato Renata
Stem Cell Laboratory, Division of Specialized Laboratories, Instituto Nacional de Câncer (INCA), Rio de Janeiro, 20230-130, RJ, Brazil.
Biochem Biophys Rep. 2025 May 11;42:102050. doi: 10.1016/j.bbrep.2025.102050. eCollection 2025 Jun.
Gastric cancer (GC) remains one of the leading causes of cancer-related mortality worldwide, with high molecular heterogeneity contributing to its poor prognosis. Among potential biomarkers, is associated with aggressive tumor behavior and poor patient outcomes. However, the transcriptional mechanisms governing expression in GC remain largely unexplored. This study aimed to systematically investigate the upstream regulatory landscape of and its role in tumor progression. By integrating multicohort transcriptomic data (n = 945), we inferred consensus transcriptional regulatory networks (TRNs) and identified six putative transcription factors (PRRX1, TWIST1, SNAI2, MEIS3, VENTX, and EGR2) as robust regulators of . The functional enrichment analysis revealed that these regulators are involved in the epithelial-mesenchymal transition (EMT) and extracellular matrix remodeling, key processes associated with tumor invasion and metastasis. Experimental validation using chromatin immunoprecipitation (ChIP) assays indicated the direct and differential binding of TWIST1 and SNAI2 to the promoter, supporting their roles as key regulators of expression in GC. Our findings provide a mechanistic link between expression and EMT transcriptional programs, offering insights into its association with a poor prognosis. By integrating bioinformatic predictions with experimental demonstration, this study not only improves our understanding of regulation but also provides a framework for dissecting the transcriptional networks governing aggressive tumor phenotypes. These results contribute to a broader understanding of GC progression and may inform future therapeutic strategies targeting EMT-related pathways in GC.
胃癌(GC)仍然是全球癌症相关死亡的主要原因之一,其高度的分子异质性导致预后不良。在潜在的生物标志物中, 与侵袭性肿瘤行为和患者不良预后相关。然而,GC中调控 表达的转录机制在很大程度上仍未被探索。本研究旨在系统地研究 的上游调控格局及其在肿瘤进展中的作用。通过整合多队列转录组数据(n = 945),我们推断出共识转录调控网络(TRNs),并确定了六个假定的转录因子(PRRX1、TWIST1、SNAI2、MEIS3、VENTX和EGR2)作为 的强大调控因子。功能富集分析表明,这些调控因子参与上皮-间质转化(EMT)和细胞外基质重塑,这是与肿瘤侵袭和转移相关的关键过程。使用染色质免疫沉淀(ChIP)分析进行的实验验证表明,TWIST1和SNAI2与 启动子直接且差异性结合,支持它们作为GC中 表达关键调控因子的作用。我们的研究结果提供了 表达与EMT转录程序之间的机制联系,深入了解了其与不良预后的关联。通过将生物信息学预测与实验证明相结合,本研究不仅增进了我们对 调控的理解,还提供了一个剖析控制侵袭性肿瘤表型的转录网络的框架。这些结果有助于更广泛地理解GC进展,并可能为未来针对GC中EMT相关途径的治疗策略提供参考。