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A novel DNA aptamer for Vibrio cholerae O139 detection: a whole-cell SELEX approach.

作者信息

Karthikeyan Masilamani, Ramya Mohandass, Rathinasabapathi Pasupathi

机构信息

Department of Genetic Engineering, School of Bioengineering, College of Engineering and Technology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, 603 203, India.

出版信息

Mol Biol Rep. 2025 Jun 9;52(1):569. doi: 10.1007/s11033-025-10677-y.

DOI:10.1007/s11033-025-10677-y
PMID:40488973
Abstract
摘要

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A novel DNA aptamer for Vibrio cholerae O139 detection: a whole-cell SELEX approach.一种用于检测霍乱弧菌O139的新型DNA适配体：全细胞SELEX方法。
Mol Biol Rep. 2025 Jun 9;52(1):569. doi: 10.1007/s11033-025-10677-y.
2
OmpU as a biomarker for rapid discrimination between toxigenic and epidemic Vibrio cholerae O1/O139 and non-epidemic Vibrio cholerae in a modified MALDI-TOF MS assay.在改良的基质辅助激光解吸电离飞行时间质谱（MALDI-TOF MS）分析中，外膜蛋白U（OmpU）作为一种生物标志物，用于快速区分产毒霍乱弧菌O1/O139与流行株和非流行株霍乱弧菌。
BMC Microbiol. 2014 Jun 18;14:158. doi: 10.1186/1471-2180-14-158.
3
Molecular analysis of Vibrio cholerae O1, O139, non-O1, and non-O139 strains: clonal relationships between clinical and environmental isolates.霍乱弧菌O1、O139、非O1和非O139菌株的分子分析：临床分离株与环境分离株之间的克隆关系
Appl Environ Microbiol. 2001 Feb;67(2):910-21. doi: 10.1128/AEM.67.2.910-921.2001.
4
ToxR regulates virulence gene expression in non-O1 strains of Vibrio cholerae that cause epidemic cholera.ToxR调节引起霍乱流行的霍乱弧菌非O1菌株中的毒力基因表达。
Infect Immun. 1994 Jan;62(1):72-8. doi: 10.1128/iai.62.1.72-78.1994.
5
Genetic and mutational analysis of virulence traits and their modulation in an environmental toxigenic non-O1/non-O139 strain, VCE232.毒力特性的遗传和突变分析及其在环境产毒非 O1/非 O139 菌株 VCE232 中的调节
Microbiology (Reading). 2022 Feb;168(2). doi: 10.1099/mic.0.001135.
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Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.泰国临床和环境来源霍乱弧菌的特征及遗传变异
PLoS One. 2017 Jan 19;12(1):e0169324. doi: 10.1371/journal.pone.0169324. eCollection 2017.
7
Robust gut associated vaccine-specific antibody-secreting cell responses are detected at the mucosal surface of Bangladeshi subjects after immunization with an oral killed bivalent V. cholerae O1/O139 whole cell cholera vaccine: comparison with other mucosal and systemic responses.在孟加拉国受试者口服灭活二价霍乱弧菌O1/O139全细胞霍乱疫苗免疫后，在其黏膜表面检测到强大的肠道相关疫苗特异性抗体分泌细胞反应：与其他黏膜和全身反应的比较。
Vaccine. 2009 Feb 25;27(9):1386-92. doi: 10.1016/j.vaccine.2008.12.041. Epub 2009 Jan 13.
8
Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014.霍乱弧菌O139血清群：2013年至2014年期间在孟加拉国霍乱患者及无症状家庭成 员中的分离情况
PLoS Negl Trop Dis. 2015 Nov 12;9(11):e0004183. doi: 10.1371/journal.pntd.0004183. eCollection 2015 Nov.
9
Comparison of O-specific polysaccharide responses in patients following infection with O139 versus vaccination with a bivalent (O1/O139) oral killed cholera vaccine in Bangladesh.孟加拉国感染 O139 血清型与接种二价（O1/O139）口服霍乱死疫苗后患者 O 特异性多糖反应的比较。
mSphere. 2023 Oct 24;8(5):e0025523. doi: 10.1128/msphere.00255-23. Epub 2023 Aug 30.
10
Defining Polysaccharide-Specific Antibody Targets against Vibrio cholerae O139 in Humans following O139 Cholera and following Vaccination with a Commercial Bivalent Oral Cholera Vaccine, and Evaluation of Conjugate Vaccines Targeting O139.在感染 O139 霍乱弧菌和接种商业双价口服霍乱疫苗后，针对人类 O139 霍乱弧菌的多糖特异性抗体靶点的定义，以及针对 O139 的结合疫苗的评估。
mSphere. 2021 Aug 25;6(4):e0011421. doi: 10.1128/mSphere.00114-21. Epub 2021 Jul 7.

本文引用的文献

1
Protein subcellular localization prediction tools.蛋白质亚细胞定位预测工具。
Comput Struct Biotechnol J. 2024 Apr 15;23:1796-1807. doi: 10.1016/j.csbj.2024.04.032. eCollection 2024 Dec.
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Measuring the Affinities of RNA and DNA Aptamers with DNA Origami-Based Chiral Plasmonic Probes.基于 DNA 折纸手性等离子体探针测量 RNA 和 DNA 适体的亲和力。
Anal Chem. 2022 Dec 20;94(50):17577-17586. doi: 10.1021/acs.analchem.2c04034. Epub 2022 Dec 8.
3
Development and characterization of DNA aptamer against Retinoblastoma by Cell-SELEX.
通过细胞 SELEX 技术筛选针对视网膜母细胞瘤的 DNA 适体的开发和鉴定。
Sci Rep. 2022 Sep 28;12(1):16178. doi: 10.1038/s41598-022-20660-3.
4
The selection of highly specific and selective aptamers using modified SELEX and their use in process analytical techniques for Lucentis bioproduction.使用改良的指数富集的配体系统进化技术筛选高特异性和选择性的适配体及其在雷珠单抗生物生产过程分析技术中的应用。
RSC Adv. 2020 Aug 4;10(48):28906-28917. doi: 10.1039/d0ra03542d. eCollection 2020 Aug 3.
5
Aptamer-nanobody based ELASA for detection of O1.基于适配体-纳米抗体的酶联免疫吸附测定法检测O1
Iran J Microbiol. 2020 Aug;12(4):263-272. doi: 10.18502/ijm.v12i4.3928.
6
Recent Progress in the Identification of Aptamers Against Bacterial Origins and Their Diagnostic Applications.近年来，针对细菌起源的适体鉴定及其诊断应用的研究进展。
Int J Mol Sci. 2020 Jul 18;21(14):5074. doi: 10.3390/ijms21145074.
7
The HDOCK server for integrated protein-protein docking.HDOCK 服务器：用于整合蛋白质-蛋白质对接
Nat Protoc. 2020 May;15(5):1829-1852. doi: 10.1038/s41596-020-0312-x. Epub 2020 Apr 8.
8
Colorimetric immunoassay for Listeria monocytogenes by using core gold nanoparticles, silver nanoclusters as oxidase mimetics, and aptamer-conjugated magnetic nanoparticles.基于核壳金纳米粒子、银纳米簇作为氧化酶模拟物和适配体偶联磁性纳米粒子的李斯特菌显色免疫分析方法
Mikrochim Acta. 2018 Jul 5;185(8):360. doi: 10.1007/s00604-018-2896-1.
9
DNA aptamer identification and characterization for E. coli O157 detection using cell based SELEX method.使用基于细胞的SELEX方法鉴定和表征用于检测大肠杆菌O157的DNA适配体。
Anal Biochem. 2017 Nov 1;536:36-44. doi: 10.1016/j.ab.2017.08.005. Epub 2017 Aug 14.
10
DNA aptamer-based colorimetric detection platform for Salmonella Enteritidis.基于 DNA 适体的沙门氏菌显色检测平台。
Biosens Bioelectron. 2017 Dec 15;98:22-28. doi: 10.1016/j.bios.2017.06.029. Epub 2017 Jun 16.