Xu Q, Liu T, Wang J
Institute of Medical Technology, Peking University Health Science Center, Beijing 100191, China.
Center of Basic Medical Research, Institute of Medical Innovation and Research, Peking University Third Hospital, Beijing 100191, China.
Beijing Da Xue Xue Bao Yi Xue Ban. 2025 Jun 18;57(3):569-577. doi: 10.19723/j.issn.1671-167X.2025.03.022.
To construct a long non-coding RNA (lncRNA) model based on ferroptosis and predict the prognosis of non-small cell lung cancer (NSCLC) patients after radiotherapy, to develop a comprehensive framework that integrates genomic data with clinical outcomes, and to identify lncRNA associated with ferroptosis and evaluate their predictive power for patient survival and progression-free survival following radiotherapy.
This study commenced by acquiring standardized transcriptome data from primary tumors and normal tissues, along with corresponding clinical information, from the cancer genome atlas (TCGA) database. This dataset provided a robust foundation for identifying differentially expressed genes (DEGs) related to ferroptosis. These analyses helped pinpoint specific pathways and biological processes involved in ferroptosis, such as glutathione metabolism, lipid signaling, oxidative stress, and reactive oxygen species (ROS) metabolism. Subsequently, univariate and multivariate Cox regression analyses were conducted to construct a predictive model based on lncRNA associated with ferroptosis. The goal was to differentiate between the high-risk and low-risk groups of NSCLC patients who had undergone radiotherapy. By incorporating these lncRNA into the model, we aimed to provide a more accurate prediction of patient outcomes. The performance of the model was validated by comparing the survival rates and progression-free survival between the high-risk and low-risk groups. Additionally, differences in gene expression patterns and pathway activities between these two groups were examined to further validate the model's effectiveness.
Our analysis revealed that the differentially expressed genes related to ferroptosis were significantly enriched in several key pathways, including ferroptosis itself, glutathione metabolism, lipid signaling, and processes involving oxidative stress and ROS metabolism. Based on these findings, we constructed a prognostic model using 14 lncRNA that showed strong associations with ferroptosis. Further data analysis demonstrated that these lncRNA could independently predict the prognosis of NSCLC patients after radiotherapy. Specifically, age, stage, and gender were used as clinical pathological variables, and the results indicated that the high-risk group of NSCLC patients had a poorer prognosis following radiotherapy. This finding underscores the potential of the model to serve as a valuable tool for predicting prognosis for NSCLC patients undergoing radiotherapy.
The risk model developed in this study can independently predict the prognosis of NSCLC patients after radiotherapy. This model provides a solid basis for understanding the role of ferroptosis-related lncRNA in the prognosis of NSCLC patients following radiotherapy. Furthermore, it offers clinical guidance for combining radiotherapy with ferroptosis-targeted treatments, potentially improving therapeutic outcomes for NSCLC patients. The integration of genomic and clinical data in this study highlights the importance of personalized medicine approaches in oncology, paving the way for more precise and effective treatment strategies.
构建基于铁死亡的长链非编码RNA(lncRNA)模型,预测非小细胞肺癌(NSCLC)患者放疗后的预后,建立一个将基因组数据与临床结果相结合的综合框架,识别与铁死亡相关的lncRNA,并评估它们对放疗后患者生存和无进展生存的预测能力。
本研究首先从癌症基因组图谱(TCGA)数据库获取原发性肿瘤和正常组织的标准化转录组数据以及相应的临床信息。该数据集为识别与铁死亡相关的差异表达基因(DEGs)提供了坚实基础。这些分析有助于确定铁死亡所涉及的特定途径和生物学过程,如谷胱甘肽代谢、脂质信号传导、氧化应激和活性氧(ROS)代谢。随后,进行单变量和多变量Cox回归分析,以构建基于与铁死亡相关的lncRNA的预测模型。目的是区分接受放疗的NSCLC患者的高风险组和低风险组。通过将这些lncRNA纳入模型,我们旨在更准确地预测患者的预后。通过比较高风险组和低风险组的生存率和无进展生存率来验证模型的性能。此外,检查这两组之间基因表达模式和途径活性的差异,以进一步验证模型的有效性。
我们的分析表明,与铁死亡相关的差异表达基因在几个关键途径中显著富集,包括铁死亡本身、谷胱甘肽代谢、脂质信号传导以及涉及氧化应激和ROS代谢的过程。基于这些发现,我们使用14个与铁死亡有强关联的lncRNA构建了一个预后模型。进一步的数据分析表明,这些lncRNA可以独立预测NSCLC患者放疗后的预后。具体而言,将年龄、分期和性别作为临床病理变量,结果表明NSCLC患者的高风险组放疗后的预后较差。这一发现强调了该模型作为预测接受放疗的NSCLC患者预后的有价值工具的潜力。
本研究开发的风险模型可以独立预测NSCLC患者放疗后的预后。该模型为理解铁死亡相关lncRNA在NSCLC患者放疗后预后中的作用提供了坚实基础。此外,它为放疗与铁死亡靶向治疗相结合提供了临床指导,有可能改善NSCLC患者的治疗效果。本研究中基因组和临床数据的整合突出了肿瘤学中个性化医疗方法的重要性,为更精确和有效的治疗策略铺平了道路。