Suppr超能文献

一种与胶质瘤免疫景观和放疗反应相关的预后铁死亡相关长链非编码RNA特征

A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma.

作者信息

Zheng Jianglin, Zhou Zijie, Qiu Yue, Wang Minjie, Yu Hao, Wu Zhipeng, Wang Xuan, Jiang Xiaobing

机构信息

Department of Neurosurgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

Department of Otolaryngology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

Front Cell Dev Biol. 2021 May 19;9:675555. doi: 10.3389/fcell.2021.675555. eCollection 2021.

Abstract

Recent studies have demonstrated that long non-coding RNAs (lncRNAs) are implicated in the regulation of tumor cell ferroptosis. However, the prognostic value of ferroptosis-related lncRNAs has never been comprehensively explored in glioma. In this study, the transcriptomic data and clinical information of glioma patients were downloaded from TCGA, CGGA and Rembrandt databases. We identified 24 prognostic ferroptosis-related lncRNAs, 15 of which (SNAI3-AS1, GDNF-AS1, WDFY3-AS2, CPB2-AS1, WAC-AS1, SLC25A21-AS1, ARHGEF26-AS1, LINC00641, LINC00844, MIR155HG, MIR22HG, PVT1, SNHG18, PAXIP1-AS2, and SBF2-AS1) were used to construct a ferroptosis-related lncRNAs signature (FRLS) according to the least absolute shrinkage and selection operator (LASSO) regression. The validity of this FRLS was verified in training (TCGA) and validation (CGGA and Rembrandt) cohorts, respectively. The Kaplan-Meier curves revealed a significant distinction of overall survival (OS) between the high- and low-risk groups. The receiver operating characteristic (ROC) curves exhibited robust prognostic capacity of this FRLS. A nomogram with improved accuracy for predicting OS was established based on independent prognostic factors (FRLS, age, and WHO grade). Besides, patients in the high-risk group had higher immune, stroma, and ESTIMATE scores, lower tumor purity, higher infiltration of immunosuppressive cells, and higher expression of immune checkpoints. Patients in the low-risk group benefited significantly from radiotherapy, while no survival benefit of radiotherapy was observed for those in the high-risk group. In conclusion, we identified the prognostic ferroptosis-related lncRNAs in glioma, and constructed a prognostic signature which was associated with the immune landscape of glioma microenvironment and radiotherapy response.

摘要

最近的研究表明,长链非编码RNA(lncRNAs)参与肿瘤细胞铁死亡的调控。然而,铁死亡相关lncRNAs在胶质瘤中的预后价值尚未得到全面探讨。在本研究中,从TCGA、CGGA和Rembrandt数据库下载了胶质瘤患者的转录组数据和临床信息。我们鉴定出24个与预后相关的铁死亡lncRNAs,其中15个(SNAI3-AS1、GDNF-AS1、WDFY3-AS2、CPB2-AS1、WAC-AS1、SLC25A21-AS1、ARHGEF26-AS1、LINC00641、LINC00844、MIR155HG、MIR22HG、PVT1、SNHG18、PAXIP1-AS2和SBF2-AS1)根据最小绝对收缩和选择算子(LASSO)回归构建了一个铁死亡相关lncRNAs特征(FRLS)。分别在训练队列(TCGA)和验证队列(CGGA和Rembrandt)中验证了该FRLS的有效性。Kaplan-Meier曲线显示高风险组和低风险组的总生存期(OS)有显著差异。受试者工作特征(ROC)曲线显示该FRLS具有强大的预后能力。基于独立预后因素(FRLS、年龄和世界卫生组织分级)建立了一个预测OS准确性更高的列线图。此外,高风险组患者的免疫、基质和ESTIMATE评分更高,肿瘤纯度更低,免疫抑制细胞浸润更高,免疫检查点表达更高。低风险组患者从放疗中显著获益,而高风险组患者未观察到放疗的生存获益。总之,我们在胶质瘤中鉴定出与预后相关的铁死亡lncRNAs,并构建了一个与胶质瘤微环境免疫格局和放疗反应相关的预后特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90ec/8170051/45b31ddfb7b9/fcell-09-675555-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验