Suppr超能文献

二氯甲烷中离子解离的溶剂化自由能:迈向精确计算之路

Solvation Free Energies of Ion Dissociations in Dichloromethane: En Route to Accurate Computations.

作者信息

Savoy Adélaïde, Paenurk Eno, Pollice Robert, Hünenberger Philippe H, Chen Peter

机构信息

Department of Chemistry and Applied Biosciences, ETH Zürich, Zürich 8093, Switzerland.

Institute of Pharma Technology, University of Applied Sciences and Arts Northwestern Switzerland, Muttenz 4132, Switzerland.

出版信息

J Phys Chem B. 2025 Jun 26;129(25):6276-6288. doi: 10.1021/acs.jpcb.5c01446. Epub 2025 Jun 13.

Abstract

Calculating accurate free energies for solution-phase reactions is notoriously difficult. In our previous joint experimental and computational studies, we observed a striking failure of quantum mechanical calculations with popular implicit solvent models to even qualitatively reproduce the experimental trends of dissociation free energies of numerous proton-bound pyridine dimers in organic solvents [Pollice, R. . 2017, 139(37), 13126-13140]; [Pollice, R. . 2019, 58(40), 14281-14288]. In this article, we expand the computational study of the dissociation of proton-bound pyridine dimers in the gas phase and in dichloromethane (DCM). In an effort to determine the prerequisites for reproducing the experimental trends and magnitudes of the dissociation free energies (Δ) in solvent, we investigated the impact of accounting for the ensemble free energy, umbrella sampling, thermodynamic integration, and explicit solvation using semiempirical quantum mechanics and molecular mechanics. We estimated the effect of conformational free energy contributions with semiempirical quantum mechanics (SE). Molecular dynamics (MD) with explicit solvation and classical molecular mechanics (MM) was used as a method to treat not only the solute but also the solvent configurational entropy. We found that explicit solvation with MM is indeed capable of reproducing Δ in DCM for our test system within an acceptable error margin. We analyze and discuss the results and limitations of our approach for calculating the solvation free energy.

摘要

计算溶液相反应的精确自由能是出了名的困难。在我们之前的联合实验和计算研究中,我们观察到,使用流行的隐式溶剂模型进行量子力学计算,甚至在定性上都无法再现许多质子键合吡啶二聚体在有机溶剂中的解离自由能的实验趋势[波利切,R. 2017,139(37),13126 - 13140];[波利切,R. 2019,58(40),14281 - 14288]。在本文中,我们扩展了对质子键合吡啶二聚体在气相和二氯甲烷(DCM)中解离的计算研究。为了确定再现溶剂中解离自由能(Δ)的实验趋势和大小的先决条件,我们研究了考虑系综自由能、伞形采样、热力学积分以及使用半经验量子力学和分子力学进行显式溶剂化的影响。我们用半经验量子力学(SE)估计了构象自由能贡献效应。具有显式溶剂化的分子动力学(MD)和经典分子力学(MM)被用作不仅处理溶质而且处理溶剂构型熵的方法。我们发现,对于我们的测试系统,用MM进行显式溶剂化确实能够在可接受的误差范围内再现DCM中的Δ。我们分析并讨论了我们计算溶剂化自由能方法的结果和局限性。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验