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乙型肝炎病毒X蛋白与损伤特异性DNA结合蛋白1复合物的结构基础

Structural basis of the hepatitis B virus X protein in complex with DDB1.

作者信息

Tanaka Hiroki, Diogo Dias Joao, Jay Basile, Kita Shunsuke, Sasaki Mina, Takeda Hiroyuki, Kishimoto Naoki, Sasaki Shunsuke, Misumi Shogo, Mizokami Masashi, Neuveut Christine, Sumikama Takashi, Shibata Mikihiro, Maenaka Katsumi, Machida Shinichi

机构信息

Department of Structural Virology, National Institute of Global Health and Medicine, Japan Institute for Health Security, Shinjuku-ku, Tokyo 162-8655, Japan.

Institut de Génétique Humaine, Laboratoire de Virologie Moléculaire, CNRS Université de Montpellier, Montpellier 34000, France.

出版信息

Proc Natl Acad Sci U S A. 2025 Jun 17;122(24):e2421325122. doi: 10.1073/pnas.2421325122. Epub 2025 Jun 13.

DOI:10.1073/pnas.2421325122
PMID:40512786
原文链接:
https://pmc.ncbi.nlm.nih.gov/articles/PMC12184330/
Abstract

A cure for chronic hepatitis B requires eliminating or permanently silencing covalently closed circular DNA (cccDNA). A pivotal target of this approach is the hepatitis B virus (HBV) X protein (HBx), which is a key factor that promotes transcription from cccDNA. However, the HBx structure remains unsolved. Here, we present the cryoelectron microscopy structure of HBx in complex with DDB1, which is an essential complex for cccDNA transcription. In this structure, hydrophobic interactions within HBx were identified, and mutational analysis highlighted their importance in the HBV life cycle. Our biochemical analysis revealed that the HBx-DDB1 complex directly interacts simultaneously with NSE3, which is a component of the SMC5/6 complex, and Spindlin1. Additionally, HBx-DDB1 complex dynamics were explored via high-speed atomic force microscopy. These findings provide comprehensive insights into the structure and function of HBx in HBV replication.

摘要

治愈慢性乙型肝炎需要消除或永久沉默共价闭合环状DNA(cccDNA)。这种方法的一个关键靶点是乙型肝炎病毒(HBV)X蛋白(HBx),它是促进cccDNA转录的关键因素。然而,HBx的结构仍未解析。在此,我们展示了与DDB1复合的HBx的冷冻电子显微镜结构,DDB1是cccDNA转录所必需的复合物。在该结构中,鉴定出了HBx内的疏水相互作用,突变分析突出了它们在HBV生命周期中的重要性。我们的生化分析表明,HBx-DDB1复合物直接同时与SMC5/6复合物的一个组分NSE3以及Spindlin1相互作用。此外,通过高速原子力显微镜探索了HBx-DDB1复合物的动力学。这些发现为HBx在HBV复制中的结构和功能提供了全面的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/664dfa70357a/pnas.2421325122fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/0df538979e7a/pnas.2421325122fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/0ca31781c14a/pnas.2421325122fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/c18274608ccb/pnas.2421325122fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/664dfa70357a/pnas.2421325122fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/0df538979e7a/pnas.2421325122fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/0ca31781c14a/pnas.2421325122fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/c18274608ccb/pnas.2421325122fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/553d/12184330/664dfa70357a/pnas.2421325122fig04.jpg

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本文引用的文献

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Nat Commun. 2023 Aug 3;14(1):4663. doi: 10.1038/s41467-023-40225-w.
2
Imaging single CaMKII holoenzymes at work by high-speed atomic force microscopy.利用高速原子力显微镜研究工作状态下的单个 CaMKII 全酶。
Sci Adv. 2023 Jun 30;9(26):eadh1069. doi: 10.1126/sciadv.adh1069.
3
TRIM25 inhibits HBV replication by promoting HBx degradation and the RIG-I-mediated pgRNA recognition.
TRIM25 通过促进 HBx 降解和 RIG-I 介导的 pgRNA 识别来抑制 HBV 复制。
Chin Med J (Engl). 2023 Apr 5;136(7):799-806. doi: 10.1097/CM9.0000000000002617.
4
Identification of critical residues in the regulatory protein HBx for Smc5/6 interaction and hepatitis B virus production.鉴定调控蛋白 HBx 与 Smc5/6 相互作用和乙型肝炎病毒产生的关键残基。
Antiviral Res. 2023 Mar;211:105519. doi: 10.1016/j.antiviral.2022.105519. Epub 2022 Dec 30.
5
Hepatitis B virus X protein mediated epigenetic alterations in the pathogenesis of hepatocellular carcinoma.乙型肝炎病毒 X 蛋白在肝细胞癌发病机制中的表观遗传改变。
Hepatol Int. 2022 Aug;16(4):741-754. doi: 10.1007/s12072-022-10351-6. Epub 2022 Jun 1.
6
How to achieve functional cure of HBV: Stopping NUCs, adding interferon or new drug development?如何实现乙肝功能性治愈:停止核苷(酸)类似物,加用干扰素或开发新药?
J Hepatol. 2022 Jun;76(6):1249-1262. doi: 10.1016/j.jhep.2021.11.024.
7
Hepatitis B Viral Protein HBx and the Molecular Mechanisms Modulating the Hallmarks of Hepatocellular Carcinoma: A Comprehensive Review.乙型肝炎病毒蛋白 HBx 及其调控肝细胞癌特征的分子机制:全面综述。
Cells. 2022 Feb 21;11(4):741. doi: 10.3390/cells11040741.
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Therapeutic shutdown of HBV transcripts promotes reappearance of the SMC5/6 complex and silencing of the viral genome in vivo.HBV 转录物的治疗性失活可促进 SMC5/6 复合物的重新出现,并在体内沉默病毒基因组。
Gut. 2022 Feb;71(2):372-381. doi: 10.1136/gutjnl-2020-322571. Epub 2021 Jan 28.
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HBV X protein mutations affect HBV transcription and association of histone-modifying enzymes with covalently closed circular DNA.HBV X 蛋白突变影响 HBV 转录和组蛋白修饰酶与共价闭合环状 DNA 的结合。
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